Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3907 ATGAGCAACATAAGCATGGTAGAGGCAAAACTCCCACCTGGATTCAGGTTCCATCCCAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTGACACACAGTGATTCCCTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGCAACAGCGTGTGTGGGAGGGAAGGAGTGGTATTTCTACACACAGAGAGATCGCAAGTATGCAACAGGGCTTCGAACAAATCGTGCCACTAGTTCAGGGTATTGGAAGGCCACTGGGAAAGACAGGGCAATACATCGCAGGGGCACTCTTGTTGGGATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGAAGAAAAACAGAGTGGGTCATGCATGAGTTTCGCATTGAAGGACCCCATGGCCCTCCTAAAATTCCTTCTTCCAAGGAAGACTGGGTTTTATGTAGGGTGTTCTACAAAAGCAGAGAGGTAGCAACCAAACCTAGCATGGGTAGCTGCTATGAAGACACAGGATCTTCATCTCTTCCTGCACTAATGGACTCTTACATCAGTTTTGACCAAGCTCCGATCCACACAGATGAACATGATGAGCAAGTGCCCTGCTTCTCCATTTTTTCTCAAAACCAAACCAACCCCATTTTCAACCACATAACCAACAACATGGACCTAAAATTACCAGCTGCCAACAACAACACAACTACTACATATGGAGGAGGAGCACCCAATTTGGGTTATAGCTTAGACCCTTTGTCCTGTGAGAGTAAAGTGTTAAAAGCTGTTTTAAGTGAGCTCACAAAGATGGAAAGAAACCCACTTAACCCAAGTCTTGGCTCACCAAGTTTAGGAGAAGGAAGTTCAGAGAGTTACTTATCTGAAGTGGGCATGCCCCACTTGTGGAATAATTATTAA 924 0.4513 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSLLMIDVDLNKCEPWDIPATACVGGKEWYFYTQRDRKYATGLRTNRATSSGYWKATGKDRAIHRRGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKIPSSKEDWVLCRVFYKSREVATKPSMGSCYEDTGSSSLPALMDSYISFDQAPIHTDEHDEQVPCFSIFSQNQTNPIFNHITNNMDLKLPAANNNTTTTYGGGAPNLGYSLDPLSCESKVLKAVLSELTKMERNPLNPSLGSPSLGEGSSESYLSEVGMPHLWNNY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3907 307 MobiDBLite consensus disorder prediction 274 293 - -
Lja3g3907 307 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Lja3g3907 307 MobiDBLite consensus disorder prediction 274 292 - -
Lja3g3907 307 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Lja3g3907 307 SUPERFAMILY NAC domain 2 158 IPR036093 GO:0003677|GO:0006355
Lja3g3907 307 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Lja3g3907 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 217 - -
Lja3g3907 307 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3907 Lja-Chr3 76913936 76919962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3907 2 305 NAC Transcription Factor Family AT1G56010 60.815 1.54e-128 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g3907 NAM 2e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3907 3 76913936 76919962 Lja3g3907 3 76913936 76919962 ECH