Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3889 ATGCTTATATTGGTGGGGAACGTGCAAGGAACAATGAGTTCTCTTGCTTCCCCAGTGAGTTTGGGGAGTCTTACAGGGGTGAGTTCCTCTGGGAGGTCTCATTCTGTTGTGAGGAGAGTCTCTCTTTCTAGAGGGAACTGTAAGAAGAACAAGAAATGGCATTGTGTGTCCTTTTCTATCTGTAGATATTCAGTCACCACAACTGATTTTATTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAGTAGTGATAGTAAAGGTGGAGATAGTAGTGCTGGTTTTGTCCTTAAGCCTCCTCCTAAGCCTGTGTTGAAGTCCCCGGGCGATAAGGGGGACCCCATTTTAGGCTCAGGTTCTTGGGGGGGTTCAAGGAAAACTGAGGACTCGGATGATGTCGAAGAGAGGAATAAAGTGATTGAATCGCTTGGAGAGGTATTGGAGAAGGCTGAAAAGCTGGGAAGTCCTAAATTGGATGGGGAAAGAAATAACGGGTCGGTAAATAAACCGGCAAGACCTGATGTTAATGCTAATCCTAGGGCTGATAATAAGCCTGTAAATTCAGTAAAAACCCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGACACAGTTGCAACTGTGAAGAAGGTTGTGAAAGAAGTGCCGAGGCCTACTAGCAAGATTGAAGTGGGGAAATCTGAAATTGGGGGAGAGGAGAAGGTTACACCGCAGTCTCGTGCTCCTCAGCCTCCTTCAAAACCTCAACCAATGTTACAATCGAAGCCTTCTATAGCTCCCCCACCCATAAAAAAACCTGTTGTGTTGAAGGATAAGGGGGAAGCTGAACCAACTGTTAAATCAAAAGAAAGGAAGCCCATCTTGATTGATAAGTTCGCATCCAAGAAACCAGCAGTTGATCCTTCAATTGCTCAAGCAGTTCTGGCCCCTCCAAAACCAGGGAAGGCTCCTCCCCCAGGAAAGTTTAAAGATGATTACCGGAGGAAAGGTGCTCCCACTGGGGGAGGACCAAGAAGACGACTAGTAGCTGATGATATGATTGCTGATGAGGACACATCAGAACTCAATGTCTCTATTCCTGGTAAAACAAGAAAAGGAAGGAAATGGAGTAAAGCAAGCCGAAAGGCAGCAAGACTCCAGGCGGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTCTTGAGGTCGATGAAAAAGGTATGCTGGTGGAGGAGTTGGCCTACAATTTGGCAATCAGCGAAGGTGAAATCCTGGGTATTCTATACGCTAAGGGGATTAAACCAGATGGGGTACAAACTCTAGACAAAGATATGGTGAGGATGATTTGTAATGAGTACGATGTTGAAGTTATAGATGCTGATCCTGTCAAAGTTGAAGGATTAATGAAGAAAAGAGACATTCTTGATGAAGGTGACCTTGACAAACTCAAAGATAGGCCTCCTGTCATTACTATTATGGGCCATGTAGATCATGGCAAGACAACACTTTTGGATTATATACGGAAGAGCAAGGTAGTTGCTTCAGAAGCTGGTGGGATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCTATTGATGGTAAACCATTGCCTTGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGCGCAATGAGAGCCCGTGGAGCAAGTGTAACAGACATTGTCATTATTGTTGTGGCTGCTGATGACGGTATTCGTCCACAGACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTGCCCATAATCATTGCTATAAATAAGATAGATAAAGATGGTGCAAATCCAGAACGAGTAATGCAAGAGCTTTCTTCGATTGGTTTAATGCCAGAAGACTGGGGTGGTGACATCCCAATGGTTCAGATAAGTGCTCTTCAAGGGAAGAACGTAGATGATCTTTTAGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCAAAGGGCACAGTCATCGAGGCAGGGCTAGATAAATCAAAAGGACCATTTGCTACATTTATTGTACAGAATGGTTCCCTTAAAAGGGGAGATATAGTAGTTTGCGGAGAAGCATTCGGAAAGGTGCGGGCTCTATTTGATGATGGTGGAAAGCGTGTTGATGTAGCTACACCTTCTATACCTGTACAGGTTATTGGATTGAATCATGTTCCTATTGCTGGCGATGTATTTGAGGTTGTTGAGTCCCTTGATACTGCACGTGAAAGAGCAGATTCCCGTGCTGAGTCATTGCGAAATGAGCGTATTTCAGCAAAGGCAGGGGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCTGCAGTTTCATCAGGAAAGCTTTCTGGATTAGATCTGCACCAGCTAAACATTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCTGTCAAGCAAGCCCTGCAGGTGCTACCACAAGATAATGTCACGCTGAAGTTTTTATTGGAAACAACTGGGGATGTAAGCACAAGTGATGTTGACCTTGCGGTTGCAAGTAAAGCCATTATCTTTGGATTTAATGTCAAGGCACCAGGCCCTGTCAAAACCTATGCAGACAACAAAGCTGTTGAAATTAGAATATATAGAGTTATTTATGAATTAATTGATGATGTACGAAATGCAATGGAAGGGCTCCTGGACCTTGTTGAGGAACACATAACAATTGGTTCAGCAGAAGTGCGGGCCACATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGTATGATCACGGACGGAAAGATACAAAGTGGCTGTGGTATTCGAGTCATTCGGAAGAAAAAAACGGTTCATGTTGGTACTCTTGTTTCCTTGAGACGGGTGAAGGAGATTGTTAAAGAGGTAAATGCTGGTCTTGAGTGCGGACTTGGGTTAGAGGACTTTGATGATTGGGAAGAGGGAGATTTTGTTGAAGCCTTCAACACAGTTCAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTAAACTATAG 3027 0.4443 MLILVGNVQGTMSSLASPVSLGSLTGVSSSGRSHSVVRRVSLSRGNCKKNKKWHCVSFSICRYSVTTTDFIADQGNSVSLDSSSDSKGGDSSAGFVLKPPPKPVLKSPGDKGDPILGSGSWGGSRKTEDSDDVEERNKVIESLGEVLEKAEKLGSPKLDGERNNGSVNKPARPDVNANPRADNKPVNSVKTQKSKTLKSVWRKGDTVATVKKVVKEVPRPTSKIEVGKSEIGGEEKVTPQSRAPQPPSKPQPMLQSKPSIAPPPIKKPVVLKDKGEAEPTVKSKERKPILIDKFASKKPAVDPSIAQAVLAPPKPGKAPPPGKFKDDYRRKGAPTGGGPRRRLVADDMIADEDTSELNVSIPGKTRKGRKWSKASRKAARLQAAKDAAPVKVEILEVDEKGMLVEELAYNLAISEGEILGILYAKGIKPDGVQTLDKDMVRMICNEYDVEVIDADPVKVEGLMKKRDILDEGDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVVASEAGGITQGIGAYKVQVPIDGKPLPCVFLDTPGHEAFGAMRARGASVTDIVIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALQGKNVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGSLKRGDIVVCGEAFGKVRALFDDGGKRVDVATPSIPVQVIGLNHVPIAGDVFEVVESLDTARERADSRAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVKQALQVLPQDNVTLKFLLETTGDVSTSDVDLAVASKAIIFGFNVKAPGPVKTYADNKAVEIRIYRVIYELIDDVRNAMEGLLDLVEEHITIGSAEVRATFSSGSGRVAGCMITDGKIQSGCGIRVIRKKKTVHVGTLVSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDFVEAFNTVQKKRTLEEASASMAAAVEGVGVKL* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3889 1008 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 786 898 IPR036925 -
Lja3g3889 1008 TIGRFAM small_GTP: small GTP-binding protein domain 481 642 IPR005225 GO:0005525
Lja3g3889 1008 MobiDBLite consensus disorder prediction 243 265 - -
Lja3g3889 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 655 IPR027417 -
Lja3g3889 1008 TIGRFAM IF-2: translation initiation factor IF-2 401 990 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lja3g3889 1008 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 479 652 IPR000795 GO:0003924|GO:0005525
Lja3g3889 1008 MobiDBLite consensus disorder prediction 214 289 - -
Lja3g3889 1008 Pfam Translation initiation factor IF-2, N-terminal region 401 450 IPR006847 -
Lja3g3889 1008 CDD mtIF2_IVc 898 980 - -
Lja3g3889 1008 MobiDBLite consensus disorder prediction 214 232 - -
Lja3g3889 1008 Hamap Translation initiation factor IF-2 [infB]. 7 988 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lja3g3889 1008 MobiDBLite consensus disorder prediction 320 334 - -
Lja3g3889 1008 Pfam Translation-initiation factor 2 787 880 IPR023115 -
Lja3g3889 1008 MobiDBLite consensus disorder prediction 305 341 - -
Lja3g3889 1008 SUPERFAMILY Translation proteins 655 739 IPR009000 -
Lja3g3889 1008 Coils Coil 738 758 - -
Lja3g3889 1008 MobiDBLite consensus disorder prediction 181 195 - -
Lja3g3889 1008 Gene3D - 476 654 IPR027417 -
Lja3g3889 1008 CDD IF2_mtIF2_II 659 753 IPR044145 -
Lja3g3889 1008 Pfam Elongation factor Tu GTP binding domain 484 644 IPR000795 GO:0003924|GO:0005525
Lja3g3889 1008 ProSitePatterns Initiation factor 2 signature. 941 963 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lja3g3889 1008 Gene3D Translation factors 655 771 - -
Lja3g3889 1008 MobiDBLite consensus disorder prediction 269 289 - -
Lja3g3889 1008 SUPERFAMILY Translation proteins 895 988 IPR009000 -
Lja3g3889 1008 MobiDBLite consensus disorder prediction 150 200 - -
Lja3g3889 1008 MobiDBLite consensus disorder prediction 78 136 - -
Lja3g3889 1008 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 41 998 - -
Lja3g3889 1008 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 41 998 IPR015760 -
Lja3g3889 1008 Gene3D Translation factors 893 989 - -
Lja3g3889 1008 CDD IF2_eIF5B 482 648 - -
Lja3g3889 1008 PRINTS GTP-binding elongation factor signature 587 596 IPR000795 GO:0003924|GO:0005525
Lja3g3889 1008 PRINTS GTP-binding elongation factor signature 551 562 IPR000795 GO:0003924|GO:0005525
Lja3g3889 1008 PRINTS GTP-binding elongation factor signature 483 496 IPR000795 GO:0003924|GO:0005525
Lja3g3889 1008 PRINTS GTP-binding elongation factor signature 535 545 IPR000795 GO:0003924|GO:0005525
Lja3g3889 1008 Gene3D - 787 890 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3889 Lja-Chr3 76653225 76662045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3889 480 878 Eukaryotic Initiation Factors Gene Family AT1G76810 29.614 1.34e-27 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3889 3 76653225 76662045 Lja3g3889 3 76653225 76662045 ECH