Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3884 ATGGATGAAACCACATTGTTCTTCCCACCTGACACAGACCTCGACCTCAGCTTCACCAGCACCACCACCGACCACACCTTCACCTCCTCCAGCGCCCGCACCAGTTTAGCCCGGACAAGCAGCCTTGCCCTTAGCTTCAACGACCGCCTATCCACCGCAACCGCATATGCAACCGATACCGCCTCCGCCGCCGTCACCCGCCGTCCCCACCGTAGCTCTGATCCTCACTGGTCCGCCATCAAGGCTGCTACTACTCTCTCCTCGGATGGCCGGCTTCATCTCCGCCACCTGAAGCTCCTCCGCCACGTTGGCTCCGGTAATCTCGGCCGTGTCTTCCTCTGCCGCCTCCGCGACTATGATGGCGCGAACTTCGCTCTCAAGGTGGTCGACAAGGACCTTCTCACCCCCAAGAAGCTCTCCCACGCGGAAACTGAGGCCGACATACTCCACGCGCTTGACCACCCCTTCCTCCCCACGCTCTACGCGCGTATTGATGTGTCCCACTACACGTGCCTCCTCATTGACTACTGCCCCGGCGGCGACCTCCACTCCCTCCTTCGAAAACAACCCGGCAACCGCCTCACGATCTCCGCGGCGCGTTTCTTTGCCGCGGAGGTCCTGGTAGCGCTTGAGTACCTCCACGCGCTTGGCATCGTGTACCGTGATTTAAAGCCTGAGAATGTTCTGCTACGCGAGGACGGCCACGTCATGCTCTCCGATTTTGACCTTTGCTTCAAGGCTGATGTGGTACCCTTGTTCGAAACGCGGGCCCACAAACCCAGCGCGAGTTCCACAAGCAGTTGTTTAAGTTGTAACAACTCTGCAACCACTGAGCGGGTGGTTGCAGAGTTTGTTGCTGAACCTACTACGGCATTTTCAAGGTCGTGTGTCGGGACTCATGAATATTTAGCGCCGGAGCTCGTAACCGGCAACGGTCACGGTAACGGTGTGGATTGGTGGGCTTTTGGGGTTTTTGTTTATGAGTTGTTACACGGGACGACACCATTTAAAGGATGTAGCAAGGAGGGCACCCTGCGCAATATAGCATCAAGCAATGATGTGAGGTTTTATGAGGTGGAAGGAGAGGATGCAGGGATGGCTGTGGCGAGGGACTTGATAGAGAAGTTGCTAGTGAAGGACCCCCGGAGGAGGCTAGGGTGCGCCAGGGGTGCGACGGATATTAAACGTCACCCGTTTTTTGATGGGATCAAGTGGTCATTGATTCGGACTTACAGGCCACCGGAGGTGAAGGGGCTGTTGAGGAGGAACAAGTCACATTTGAGTCACGTGACAAGTCAAAGGAGGAGAAGCTGGTGGAAGAGACTTGGGGATGCCATGAGGAACAAAGCAGAAAAATATAATTTACTTTCAAATTATAGTAATAATAATACTTATTATCACAGTGTTGATAATAATAGCAAGAGTAGATAA 1431 0.5437 MDETTLFFPPDTDLDLSFTSTTTDHTFTSSSARTSLARTSSLALSFNDRLSTATAYATDTASAAVTRRPHRSSDPHWSAIKAATTLSSDGRLHLRHLKLLRHVGSGNLGRVFLCRLRDYDGANFALKVVDKDLLTPKKLSHAETEADILHALDHPFLPTLYARIDVSHYTCLLIDYCPGGDLHSLLRKQPGNRLTISAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKADVVPLFETRAHKPSASSTSSCLSCNNSATTERVVAEFVAEPTTAFSRSCVGTHEYLAPELVTGNGHGNGVDWWAFGVFVYELLHGTTPFKGCSKEGTLRNIASSNDVRFYEVEGEDAGMAVARDLIEKLLVKDPRRRLGCARGATDIKRHPFFDGIKWSLIRTYRPPEVKGLLRRNKSHLSHVTSQRRRSWWKRLGDAMRNKAEKYNLLSNYSNNNTYYHSVDNNSKSR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3884 476 PANTHER TELOKIN/MYOSIN LIGHT CHAIN KINASE-RELATED 10 430 - -
Lja3g3884 476 SMART serkin_6 97 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3884 476 ProSiteProfiles Protein kinase domain profile. 97 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3884 476 SUPERFAMILY Protein kinase-like (PK-like) 74 423 IPR011009 -
Lja3g3884 476 PANTHER FLIPPASE KINASE 1-RELATED 10 430 - -
Lja3g3884 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lja3g3884 476 Gene3D Transferase(Phosphotransferase) domain 1 181 415 - -
Lja3g3884 476 Gene3D Phosphorylase Kinase; domain 1 96 180 - -
Lja3g3884 476 Pfam Protein kinase domain 99 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3884 Lja-Chr3 76513827 76515456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3884 1 476 AGC Kinase Gene Family AT3G14370 64.431 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g3884 Pkinase 9e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3884 3 76513827 76515456 Lja3g3884 3 76513827 76515456 ECH