Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3865 ATGGCTGCGGTTGCTGACATTTCCGCCGCTGATGCCAACAAAATGGACTCAAAACCAAAGCCAGAATCAGAATTCACTGTGCAGAAGCTGGTTGACATGTTCACAAAGCTGAATCCTTTGGCCAAGGAGTTTTTTCCTTCATCATATTCTCTCCACAATCTTGATGATCATCATCGCCATCAGGGCTATAATAATCAGCTCACACCTACCCATTTTCTGGTCAACACTACTAAGCCATCAGCTAATGACAATTACCTTAACAATCGAAGGAGAAGAAACAGTTTTAACCAAGGGAAGAGAAGGTTGAATGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTGTATGTTTCTGATATTGATCAGCATGTTACCGAGGAACGGCTTGCCGCCTTATTCACTGGCTGCGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCAGATGAACATGGTGCTAGGGCAGCTTTAAATCTTGGTGGCACTGTGCTCGGATACTATCCAGTGAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCCGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTTCCAGGACTGTCTATTGTACAAATATTGATAAAAAGATTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGTGAGGTTACACGCTTGAGGCTTTTGGGGGATCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCATTGGCAGAAAGTGCTATCGTTGCGCTTAATTGTAGTGGGATGCTCTTGGGAACCCAGCCTGTCAGGGTAAGTCCATCAAAGACTCCAGTGAGGCCAAGGGTCACTCGGCCAACGTCACATTGA 909 0.4422 MAAVADISAADANKMDSKPKPESEFTVQKLVDMFTKLNPLAKEFFPSSYSLHNLDDHHRHQGYNNQLTPTHFLVNTTKPSANDNYLNNRRRRNSFNQGKRRLNGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFTGCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKISQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFALAESAIVALNCSGMLLGTQPVRVSPSKTPVRPRVTRPTSH* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3865 302 Gene3D - 202 296 IPR012677 -
Lja3g3865 302 Gene3D - 74 193 IPR012677 -
Lja3g3865 302 Pfam Ataxin-2 C-terminal region 33 48 IPR009818 -
Lja3g3865 302 SUPERFAMILY RNA-binding domain, RBD 204 296 IPR035979 GO:0003676
Lja3g3865 302 SMART rrm1_1 215 286 IPR000504 GO:0003723
Lja3g3865 302 SMART rrm1_1 118 188 IPR000504 GO:0003723
Lja3g3865 302 CDD RRM1_CID8_like 115 194 IPR034823 -
Lja3g3865 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 181 IPR000504 GO:0003723
Lja3g3865 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 282 IPR000504 GO:0003723
Lja3g3865 302 MobiDBLite consensus disorder prediction 78 108 - -
Lja3g3865 302 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 302 - -
Lja3g3865 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 290 IPR000504 GO:0003723
Lja3g3865 302 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g3865 302 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 302 - -
Lja3g3865 302 SUPERFAMILY RNA-binding domain, RBD 81 193 IPR035979 GO:0003676
Lja3g3865 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 192 IPR000504 GO:0003723
Lja3g3865 302 MobiDBLite consensus disorder prediction 78 92 - -
Lja3g3865 302 CDD RRM2_CID8_like 210 291 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3865 Lja-Chr3 76123774 76132296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3865 114 271 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 5.68e-11 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3865 3 76123774 76132296 Lja3g3865 3 76123774 76132296 ECH