Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3860 ATGGTGCTGTTGTCCAAACAAGCAACAGAACAATACTCCTATGTGAAGAACTGCATGGCTACACCATGTTCTTTTACAATCCCTGTGGTGGACCTATCCAAACCTGATGCAAAGAGCATCATAGTGAAGGCTTGTGAGGAGTTTGGATTCTTCAAAGTCATCAACCATGGAGTTTCCATGGAAGCTATATCCCAGTTGGAATCTGAAGCCTTAAACTTTTTCTCTATGCCAGTCACTGAAAAAGAGAAAACAGGGCTTGCAAATCCATTTGGTTATGGTAACAAGCGTATTGGACACAACGGTGATGTTGGTTGGGTTGAATACCTTCTTCTCAAAACCAACCAAGAAGTCAATGTCCCAGTTCATAGCCAAAACCCAGAGAAATTCAGGTGTGTGTTAGATGATTACTTGTGTGCTGTGAGGAACATGGGATGTGAGATTCTAGATTTGATGGCAGAAGGGTTGAAGATTCAACCAAAGAATGTGCTTAGCAAGCTTCTGATGGATAAACAGAGTGACTCTGTTTTCAGGGTGAATCACTACCCTGCTTGCCCTGAAATGGGTTTGGATGGTGAGAACTTGATTGGGTTTGGAGAACACACAGACCCACAAATCATTTCTCTGCTCAGGTCAAACAACACTTCAGGGCTTCAGATTTCTCTCAGAGATGGGAGCTGGATTTCAGTTCCACCTGACTATAGTTCCTTCTTCATCAATGTTGGTGATTCTCTTCAGGTTATGACTAATGGGCGGTTCCGGAGTGTGAAACACAGGGTTTTGGCAAATGGGTTCCAATCGAGGCTATCAATGATTTACTTTGGTGGCCCACCACTGAGTGAGAAAATAGCACCATTGCCTTCTCTCCTGAAAGGAGGAAAAGAAGAGAGCTTGTATAAGGAGTTTACATGGTTTGAGTACAAGAATTCAAGTTACGGTTCAAGATTAGCTGACAACAGGCTTGGACACTTCGAGAGAATTGCAGCCTCATAA 990 0.4313 MVLLSKQATEQYSYVKNCMATPCSFTIPVVDLSKPDAKSIIVKACEEFGFFKVINHGVSMEAISQLESEALNFFSMPVTEKEKTGLANPFGYGNKRIGHNGDVGWVEYLLLKTNQEVNVPVHSQNPEKFRCVLDDYLCAVRNMGCEILDLMAEGLKIQPKNVLSKLLMDKQSDSVFRVNHYPACPEMGLDGENLIGFGEHTDPQIISLLRSNNTSGLQISLRDGSWISVPPDYSSFFINVGDSLQVMTNGRFRSVKHRVLANGFQSRLSMIYFGGPPLSEKIAPLPSLLKGGKEESLYKEFTWFEYKNSSYGSRLADNRLGHFERIAAS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3860 329 Pfam 2OG-Fe(II) oxygenase superfamily 173 274 IPR044861 -
Lja3g3860 329 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 7 326 - -
Lja3g3860 329 Pfam non-haem dioxygenase in morphine synthesis N-terminal 27 114 IPR026992 -
Lja3g3860 329 Gene3D - 3 315 IPR027443 -
Lja3g3860 329 SUPERFAMILY Clavaminate synthase-like 11 316 - -
Lja3g3860 329 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 171 276 IPR005123 -
Lja3g3860 329 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 1 7 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3860 Lja-Chr3 76034462 76036647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3860 27 273 Glycosyltransferase AT5G59530 28.846 4.17e-26 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3860 3 76034462 76036647 Lja3g3860 3 76034462 76036647 ECH