Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3464 ATGGAAATTGATTCCTCAGGTGATTCCTGTTGGCTCTATGATTATGGCTTTGATGATATCTCTGTTGCTGCTGCAGCTGATTTCATGGTTGCAGACTCTGCTGATTTCACCTGGGTTCCTTCCAATATGAACTTGGAAATGGAATACTCACTGGATTCAACTGTCTTCGAAAGTGGCCCTTCAAAGCGGTTAAGGACTGAATCAAGTGTGTCTGGCTCCAAGGCATGTCGTGAGAAACTACGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCTATCTTGGAGCCTGGTAGGCAGCCCAAAACAGACAAGGCTGCTATAATAAGTGACGCGGTTCGAGTGGTAACCCAATTAAGAAATGAAGCTGAGAAGCTGAAGGAAATGAATAACGATTTACAAGAAAAAATTAAAGAGTTGAAGGCTGAGAAGAATGAGATTCGTGATGAGAAGAATAAGCTGAAGCTAGACAAAGAAAAGTTAGAGAAGAAGGTCAAATTGAGAAATGTACAGCCTGGCTTCCTCCCTCACGCCGACGCAGCTGTTAAAGGGAAAGGTGCTGCTAGCCACAAGCTGATACCTTACATTGGTTATCCTGGAATTGCCATGTGGCAGTTTATGCCCTCTGCTGTACTTGATACATCAAGGGATCATCTTCTTCGACCTCCAGTTGCCTAG 681 0.4376 MEIDSSGDSCWLYDYGFDDISVAAAADFMVADSADFTWVPSNMNLEMEYSLDSTVFESGPSKRLRTESSVSGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKAAIISDAVRVVTQLRNEAEKLKEMNNDLQEKIKELKAEKNEIRDEKNKLKLDKEKLEKKVKLRNVQPGFLPHADAAVKGKGAASHKLIPYIGYPGIAMWQFMPSAVLDTSRDHLLRPPVA* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3464 226 Gene3D - 73 151 IPR036638 GO:0046983
Lja3g3464 226 CDD bHLH_AtILR3_like 74 149 - -
Lja3g3464 226 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 2 226 - -
Lja3g3464 226 Pfam Helix-loop-helix DNA-binding domain 73 120 IPR011598 GO:0046983
Lja3g3464 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
Lja3g3464 226 PANTHER BHLH TRANSCRIPTION FACTOR 2 226 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lja3g3464 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 136 IPR036638 GO:0046983
Lja3g3464 226 SMART finulus 75 126 IPR011598 GO:0046983
Lja3g3464 226 Coils Coil 110 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3464 Lja-Chr3 68326075 68328588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3464 57 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.236 2.99e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g3464 HLH 9.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3464 - - gmx:100806838 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3464 3 68326075 68328588 Lja3g3464 3 68326075 68328588 ECH