Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3143 ATGGTTTTTACTTCCATACCAGTAGCTTATCTTGATGCAGCCAACTGGCACCAACAGCAACCAAATCATCAACCTGGAAACAACAATTCCACCTCTCAGCAGCGGCTTCCTCCACCGCCTCCACCTCCACCACCACCCCATGGAGCCGGTGGCACCGGCTCAATCAGGTGGGAATGGATAGCAGAGAGAGCAAGGATGGCCAACAGGCCTAAGCCGGAGACTGCACTGAAATGCCCACGTTGCCATTCCACCAACACAAAATTCTGCTATTATAACAATTACAGCTTCTCTCAGCCACGCTACATATGCAAGGCCTGCAGTAGGTACTGGACCAGCGGGGGCACCTTGAGAGACGTCCCCGTCGGCGGCGGCTACCGGAAGAACAAGAGAGGCAAAGTAGGCAGCAGCAGCAGCACCATGAAGTCCCCGGCGAGCTCTGACCGCCAAACGGGGAGTACTAGTTTTAACAAGTCTGTGTCCTCCACCGGTGGCGGCCATGCTGAAGGCCTCTCTCCCCAGGTGCCACAAGTGATGTTCATGGCTCCGTTGCATCATCAATTCTCGGAGTTTGGAAGTGGAGATATGATGGGGTTAAACTATGGCCTCAGGTATTGCCCCATTTCCGGTCCAATGGGAGGAGGAATAGGGGACCTTGGTTTCCAGATAGGAAGTGGTTTAGGTGGTGGTGGCGGCAACCATGGTGGCGGGGGTGGTGTGCCACAAATGCAGCAATTCCCTTTCTTGGCTGGTTTGGAAGGTTCACTGGTTGGTTTGTACCACCACCCTTTTGAAGGCAGTGTTCATCATCATGAGGTAATTGGATATGGTTCCGGTGGTGGTCATGGGGTGAGCCATTTGAGGCCAAAGGTTTCAACTTCTGGGTTGATGACTCAATTTGCTTCAGTGAAAATGGAAGGTAGTAGAGAACTTAATAATTTGTCAAGCCCCTTCTTGGGGACCAATAATATTAATCCCCCAAGTGAACAATATTGGAGCGGTACTAATTCTGCAGATTGGACTGATATTATTGGTTTTAGCTCTTCTTCTACAACTAGCAACCAAATGTAG 1068 0.5084 MVFTSIPVAYLDAANWHQQQPNHQPGNNNSTSQQRLPPPPPPPPPPHGAGGTGSIRWEWIAERARMANRPKPETALKCPRCHSTNTKFCYYNNYSFSQPRYICKACSRYWTSGGTLRDVPVGGGYRKNKRGKVGSSSSTMKSPASSDRQTGSTSFNKSVSSTGGGHAEGLSPQVPQVMFMAPLHHQFSEFGSGDMMGLNYGLRYCPISGPMGGGIGDLGFQIGSGLGGGGGNHGGGGGVPQMQQFPFLAGLEGSLVGLYHHPFEGSVHHHEVIGYGSGGGHGVSHLRPKVSTSGLMTQFASVKMEGSRELNNLSSPFLGTNNINPPSEQYWSGTNSADWTDIIGFSSSSTTSNQM* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3143 355 MobiDBLite consensus disorder prediction 18 33 - -
Lja3g3143 355 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 351 IPR045174 GO:0003700|GO:0006355
Lja3g3143 355 MobiDBLite consensus disorder prediction 34 49 - -
Lja3g3143 355 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 12 351 - -
Lja3g3143 355 MobiDBLite consensus disorder prediction 131 167 - -
Lja3g3143 355 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Lja3g3143 355 MobiDBLite consensus disorder prediction 117 167 - -
Lja3g3143 355 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Lja3g3143 355 SUPERFAMILY Formin homology 2 domain (FH2 domain) 37 46 - -
Lja3g3143 355 MobiDBLite consensus disorder prediction 18 53 - -
Lja3g3143 355 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3143 Lja-Chr3 60224176 60225677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3143 44 351 C2C2-Dof Transcription Factor Family AT3G55370 34.796 4.43e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g3143 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3143 - - aip:107628427 302.367