Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3142 ATGGTTTTTACTTCCATACCAGCAGCTTATCTTGATGCATCCAACTGGCAGCAACAGCAACCAAATCATCAACCAGGAAACAACAATTCCACCTCTCAGCACCTGCTCCCTCCTCCGCCTCCCCCTCCACTGCCACCCCATGGAGCCGGCGCCATCAGGCCGGGATCGATGTCAGACAGAGCCAGGATGGCCAACGTGCCTATGCCGGACACCGCGCTGAAGTGTCCGCGCTGCGAGTCCACCAACACAAAATTCTGCTATTTCAACAACTATAGCCTCTCTCAGCCCCGTCACTTCTGCAAGACTTGCAGAAGGTACTGGACTAGAGGCGGTGCCTTGAGGAATGTCCCGGTCGGCGGGGGCTGCCGGAGGAACAAGAGAAGCAAAGGAGGCAGCAGCAGCAACAGCGCCGGCAAGTCCCCGGCCAGCTCGGACTGCCAGACCGGGAGTGGTTGTTCCACCAATTCAGTTTCCTCCAACAGTGGCCCTTCTGCTGCTGATATCTTAGGCCTTGGACCTCAGATTCCACCAATGAGGTTCATGGCTCCATTGCATCATCATCAGTTCTCAGAGTTTGGAGCTGGTGGTGGTGGTGATATGGGGTTAAACTATGGTCTCAGTTACAACCCCATTTCAGGTGGTCCAATAGGAGGAGTAGGGGAGTTGAGTTTCCAGATAGGAGGTGCTAATTTAGGTGGTGGTGGTGGCGGCAGTGGTGGTGGTGGCGGTTGTGGTTCAATCTTATCTGGTTTGGACCAATGGCGTAGTGTGCCACAAACTCAGCAGTTTCCCTTCTTGGCTGGTCTGGAAGGTTCACCGGTTGGTTTGTACCACCACCCTTTTGAAGGCGGCAGTGTTCATCATCATGAGGTAATTGGATATGGCTCCGGTGGTGGTCATAGTCTGAGTAATTTAAGGCCAAAGATTTCAACTTCTGGGTTGATGACTCAGCTTGCTTCAGTGAAAATGGAAGATAGTAGGGAACTTAATTTGCCAAGCCAGTTCTTAGGGACCAATAATTCTGCAAGTGAACAATATTGGAGTACTACTACTGCTGGTACTAATTCTGCAGCTTGGACTGATATTTCTGGTTTTAGCTCTTCTTCTACAACTAGCAACCAAATGTAG 1128 0.5133 MVFTSIPAAYLDASNWQQQQPNHQPGNNNSTSQHLLPPPPPPPLPPHGAGAIRPGSMSDRARMANVPMPDTALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGSSSNSAGKSPASSDCQTGSGCSTNSVSSNSGPSAADILGLGPQIPPMRFMAPLHHHQFSEFGAGGGGDMGLNYGLSYNPISGGPIGGVGELSFQIGGANLGGGGGGSGGGGGCGSILSGLDQWRSVPQTQQFPFLAGLEGSPVGLYHHPFEGGSVHHHEVIGYGSGGGHSLSNLRPKISTSGLMTQLASVKMEDSRELNLPSQFLGTNNSASEQYWSTTTAGTNSAAWTDISGFSSSSTTSNQM* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3142 375 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Lja3g3142 375 MobiDBLite consensus disorder prediction 34 49 - -
Lja3g3142 375 MobiDBLite consensus disorder prediction 14 56 - -
Lja3g3142 375 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 371 IPR045174 GO:0003700|GO:0006355
Lja3g3142 375 Pfam Dof domain, zinc finger 71 127 IPR003851 GO:0003677|GO:0006355
Lja3g3142 375 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Lja3g3142 375 MobiDBLite consensus disorder prediction 117 159 - -
Lja3g3142 375 MobiDBLite consensus disorder prediction 14 33 - -
Lja3g3142 375 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 12 371 - -
Lja3g3142 375 MobiDBLite consensus disorder prediction 127 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3142 Lja-Chr3 60181713 60183595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3142 1 368 C2C2-Dof Transcription Factor Family AT2G37590 37.852 5.07e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g3142 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3142 - - aip:107628427 347.051