Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2782 ATGGTTTTCTCTTCTATTCCAGCATATTTAGATCCTCCCCAGTGGCACCAACAACCAAATCAGCACCAAGCTAATGGCAATGATGGCAGTCTTCATCACTTGCTTCCGCCACTAGCCCAACAGCAGCAGCATGCCCCTCATGTTGGAGGTGGTGGGGGAGGCTCAATCAGCTCAAGCCCGAGCCTGACAGCTGATCAGGCCCGGGCTCAAGCTCAGGCTCAGCTGGCTAAGATGGCACCACCACCTGAAGCTCTAAAGTGTCCTCGTTGCGAATCCACCAACACAAAATTCTGCTACTTTAACAACTACAGCCTCTCGCAGCCCCGGCACTTCTGCAAGACCTGTAAGCGTTATTGGACAAGAGGGGGTGCTCTCAGGAATGTTCCTGTTGGTGGAGGATTCCGCAGGAACAAGAAGCACAAAAAGAGTAATAGCAGTAGTAGTAGCACCTCTGAATCTGACAAACAATCACTTTCCAATTCCACCACAAATGAGCTAAATATTCCAACTAACATGACCAGTACTCTTCAGAATCTGAGCTTCCATGGGGGAAACACGATCCAAGCACAGCACAATGGTTACATGGGGTTTCAAATTGGAGGTGGTCATGGTGGTTCTTCAACTTTAGAAGGTCCTGGAGTCGATCAATGGTGGCGGTTTCAGCAGTTTCCAAATATCTTGAATGGTTTTCATGAGTCAAGTACTACTTCAGCTGTTTCTTCATTCCCATTGTTTCAAGGTGAAAGTGTTGAAGCTCATCCATCTGGTTTTGTTGGAGATGTTGGTGGTGTGGCTTCTAGGGTTCTGAATTCGTCAAGATCTCCTCTGACTATCTCAGAAAATATTAACCATCAGAATTCATGGACTGGTTTATCTTCTCTTGCACCTTCTTCTTCCGCTAGTCATCATTTCTTGTAA 918 0.4662 MVFSSIPAYLDPPQWHQQPNQHQANGNDGSLHHLLPPLAQQQQHAPHVGGGGGGSISSSPSLTADQARAQAQAQLAKMAPPPEALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCKRYWTRGGALRNVPVGGGFRRNKKHKKSNSSSSSTSESDKQSLSNSTTNELNIPTNMTSTLQNLSFHGGNTIQAQHNGYMGFQIGGGHGGSSTLEGPGVDQWWRFQQFPNILNGFHESSTTSAVSSFPLFQGESVEAHPSGFVGDVGGVASRVLNSSRSPLTISENINHQNSWTGLSSLAPSSSASHHFL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2782 305 MobiDBLite consensus disorder prediction 126 169 - -
Lja3g2782 305 MobiDBLite consensus disorder prediction 54 70 - -
Lja3g2782 305 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 299 - -
Lja3g2782 305 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Lja3g2782 305 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Lja3g2782 305 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Lja3g2782 305 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 299 IPR045174 GO:0003700|GO:0006355
Lja3g2782 305 MobiDBLite consensus disorder prediction 144 169 - -
Lja3g2782 305 MobiDBLite consensus disorder prediction 9 73 - -
Lja3g2782 305 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2782 Lja-Chr3 41874907 41876294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2782 1 141 C2C2-Dof Transcription Factor Family AT2G37590 54.483 5.24e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g2782 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2782 - - lja:Lj0g3v0331729.1 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2782 3 41874907 41876294 Lja3g2782 3 41874907 41876294 ECH
Lja3g2782 3 41874907 41876294 Lja3g0724 3 7316291 7318213 PCT