Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2713 ATGAACTCAAACAACTGGCTTTCATTCCCCCTTTCTCCAACACATTCTTCCATGCCACCTCATCTCCAAGCAACTCATGAGTCTCATCAGTTTTCTCTTGGGACTTTGGTGAACGAGAACATGGAAAGCCCTTTCCAAAATCATGATTGGAACCTGATTCACACACACAGTGACAACGAAGTTCCAAAGGTTGCAGATTTTCTGGGTGTGAGCAAGTCTGAGAATCAGTCAGATCTTGCAGCCTTTAATGAAATTCAGTCCAGTGACTCGGATTACTTCTTCAGCAACAACAGTAGTCTCATGCCGGCGATGCAACAAAACTCAGTGGTAGCCGCCACTAATTCTGGCAGTTATGAGTATCAAGAAAGTGCTAACAACAACCTGCAGTCATTGACATTGTCCATGGGAAGTGGAAAGGATTCAACATGCGAGACAAGCGGTGACACTAGCACAAACACAACTGTTGAAGCTACTGCTGCTGCACCTAGAAGAACCTTAGAAACCTTTGGCCAGAGAACATCAATATATCGCGGTGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGTCTATTTGGGTGGGTATGACAAAGAAGAGAAAGCAGCGAGGGCTTATGATTTAGCAGCATTGAAGTATTGGGGGACATCTACCACTACCAACTTTCCCATCAGTAACTATGAAAAGGAATTGGAAGAAATGAAGCACATGACAAGACAAGAATTTGTGGCCGCCATAAGAAGGAAGAGCAGTGGATTCTCACGGGGTGCATCAATGTATCGCGGAGTCACACGGCACCACCAGCATGGAAGATGGCAAGCGAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGCACTGAGGAAGAGGCTGCAGAAGCATACGACATCGCAGCGATAAAGTTCCGAGGCCTAAACGCAGTGACAAACTTCGACATGAGCCGCTACGATGTGAAAGCCATCCTTGAAAGCAACACTCTCCCAATAGGAGGAGGTGCTGCAAAAAGATTAAAAGAAGCACAAGCTCTAGAATCTTCTAGAAAAAGAGAAGAGATGATGGCACTAGGGTCAAGCTTTCAGTACGGAAGCTCAAGTGTCGTCTCAAGCGCTAGGCTTCAACAACAACAAGGTGGATGTTACCCTCTAATGCAGTTCGATCAACAACAACCGCCACAACCTTTTCTCACGCTGCAAAACCAGGACATGGGGACTCAGTACGGTCATCAAGATGCGGCGGCATCATTTCATCAGCAGGGTTACATCCAAACGCAGCTTCAGTTGAACCAGCAAAGTGGTCTGTTTTATAATAGTTACCTTCAGAACCACCCGGGTTTGCTTCAGGGGTTGATGAACATGGGTTCTTCCTCTTCTTCTTCGTCTGTGATGGAGAATGGTGGCGGTGGTGATGGCGGAGGTTATGGTTTTATGGGATTCGGTAGTAATAATGGGCTTGGAATTGGAATGGGTTCGAGTAATGTTGTGGGATCAGGGGAGGAGCATGCGCTTGTTAAGGTTGATTATGACATGCCTGCTGCGGGTTATGGCGGCTGGTCGGCGGCGGCAGACACCATACAGGGTTCAAATGGTGGTGGTGTATTTACAATGTGGAATGATTTATGA 1689 0.4618 MNSNNWLSFPLSPTHSSMPPHLQATHESHQFSLGTLVNENMESPFQNHDWNLIHTHSDNEVPKVADFLGVSKSENQSDLAAFNEIQSSDSDYFFSNNSSLMPAMQQNSVVAATNSGSYEYQESANNNLQSLTLSMGSGKDSTCETSGDTSTNTTVEATAAAPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMMALGSSFQYGSSSVVSSARLQQQQGGCYPLMQFDQQQPPQPFLTLQNQDMGTQYGHQDAAASFHQQGYIQTQLQLNQQSGLFYNSYLQNHPGLLQGLMNMGSSSSSSSVMENGGGGDGGGYGFMGFGSNNGLGIGMGSSNVVGSGEEHALVKVDYDMPAAGYGGWSAAADTIQGSNGGGVFTMWNDL* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2713 562 SUPERFAMILY DNA-binding domain 174 243 IPR016177 GO:0003677
Lja3g2713 562 SUPERFAMILY DNA-binding domain 276 337 IPR016177 GO:0003677
Lja3g2713 562 CDD AP2 276 337 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 PRINTS Ethylene responsive element binding protein signature 317 337 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 PRINTS Ethylene responsive element binding protein signature 176 187 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 Pfam AP2 domain 278 327 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 Pfam AP2 domain 175 233 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 560 - -
Lja3g2713 562 SMART rav1_2 277 341 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 SMART rav1_2 175 247 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 Gene3D AP2/ERF domain 277 337 IPR036955 GO:0003700|GO:0006355
Lja3g2713 562 Gene3D AP2/ERF domain 175 243 IPR036955 GO:0003700|GO:0006355
Lja3g2713 562 ProSiteProfiles AP2/ERF domain profile. 277 335 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 CDD AP2 174 243 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 560 - -
Lja3g2713 562 ProSiteProfiles AP2/ERF domain profile. 175 241 IPR001471 GO:0003700|GO:0006355
Lja3g2713 562 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2713 Lja-Chr3 39619427 39622241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2713 1 561 AP2-EREBP Transcription Factor Family AT3G20840 62.829 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lja3g2713 AP2 1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2713 3 39619427 39622241 Lja3g2713 3 39619427 39622241 ECH