Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2707 ATGGATTCTTCTCTTGTCTTGGCTAACCCAGTTTTGGAGCCTCATTATGATATAGAATTTGAATCTCATGAAGCTGCATATGCATTTTACAAAGAATATGCTAAGTCTGCGGGGTTCGGTACTGCTAAGTTGAGCAGTCGCCGGTCTAGGGCGTCGAAGGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGTCCCTCTCCAAAAATTGGTTGTAAAGCTAGCATGCATGTGAAGAGAAGACAAGATGGCAAGTGGTATGTCTATAGCTTTGTGAAGGAGCACAATCATGAGCTTTTACCTGCTCAAGCTCATTTTTTTCGGAGTCACCGGAGTTCTGACCCGTTAAGTAATGATGTTCGGATGCGAAGACGGAAGAACTCAACTGCAGGTTGTAAATTATTTGGTGCATATCAAAATGTTGATTGTTTAGAGAACTTTATGAAACATCAACATGATAAAGGACGGAGTTTGGTTTTAGAAGCAGGGCATGCCCAATTGCTTCTTGAACTCTTCATGCACATGCAAGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTGAGAAATGTGTTCTGGGTTGATGCTAAAGGGTTAGAAGATTTTGCTTATTTTTCTGATGTTGTCTCTTTTGACACAACATATTTCACAAGCAAGTATAAAATACCCTTGGTACTTTTCATTGGAGTAAACCATCATATTCAACCAACATTGCTTGGCTGTGCATTGATTGCCGATGAGACAATATATACTTATGCCTGGTTACTGCAAACATGGTTAATAGCAATGGGCGAGCGAGCTCCACAAGTCATTCTCACTGACCAAAATGATGCTATTAAAGCAGCGGTTGCTGCTGTTCTTCCAGGAACACGTCATTGTTTTTGTTTATGGCATGTTTTGGAAAAGATACCAAAACAACTTGAATTTTTAAGTGCATGGCATGATAGCTTCATGGAAAAATTTAACAAATGTATATATAAATCATGGACGGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGGTTTAACCTTAAAGAGGTTGAATGGGTCCAATCCTTGTATGATGATCGTACATTTTGGGTGCCAACTTATATGAGAGATATTTCTTTTGCTGGCTTGTCTACTAGTTCAAGGTCAGAAAGTTTAAATACTTTGCTTGACAACTATATCCATGCTGATACTTCGTTGAAGGAATTTATAGAACAGTACCAAGTGATTCTTGAAGATAGACATGAAGAGGAAGCCAAAGCAAATTTTGATGCATGGCATGAAACACCTGAGTTGAAATCTCCTTCCCCTTTTGAAAAACAGTTGTTGTCAGTTTACACACATGAAATTTATAAGAAGTTTCAGTTTGAGGTTTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGATGGTGTGACTACTACTTATGCTGTAAAAGACTTTGAAAATAATCAAAACTATATGGTAGAATGGAACACATCAAACTCAGATATTTGTTGTTCATGCCACTTGTTTGAATATAAAGGCTACCTTTGTAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATCCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAATTGGAAGAGATTCAATCCAAGGTCCGGCGATTCAATGATTTATGTAGACGAGCCATTATATTGGGTGAAGAAGGTTCTTTGTCTCAAGAAAGTTACTATACTGCTTTAGGTTCCATAAGTGAAGCTCTGAAGCAATGTACAAATTTGAACAACTCTGTTGAGAATGGTATGAGACCTGATGCCATAGCTACCAATGTTGTCTGCAATGTTGAGTATCAACCTTTTATTACATCTAACAATAAGGTCCCTGATCCTACTACGGCTAAGAAGACTGTGAGGTCTGATGTGGCTGGTACTGGTAGGAGTCCAGGAACTGTTGAAAATAGTGAAGGAAATAAAGGAAAGGTATCTCAGCTTGAAGCAGTGAGCAGGAAAGACGGTTTTCAAGAAATGGAGCCAACTGATCTAAGGTCACACAATGTCATGCCGATGCAGTTTCACAGTATGGTGCCACCCCTATTCCATAATGTTTCGCCACCGTTTCATACTGCAGCTTCAACTCATTTGCATGAGAACCGTCTTCCTCGTTAG 2235 0.3888 MDSSLVLANPVLEPHYDIEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLSNDVRMRRRKNSTAGCKLFGAYQNVDCLENFMKHQHDKGRSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFAYFSDVVSFDTTYFTSKYKIPLVLFIGVNHHIQPTLLGCALIADETIYTYAWLLQTWLIAMGERAPQVILTDQNDAIKAAVAAVLPGTRHCFCLWHVLEKIPKQLEFLSAWHDSFMEKFNKCIYKSWTEEQFEKRWWKLVDRFNLKEVEWVQSLYDDRTFWVPTYMRDISFAGLSTSSRSESLNTLLDNYIHADTSLKEFIEQYQVILEDRHEEEAKANFDAWHETPELKSPSPFEKQLLSVYTHEIYKKFQFEVLGAAACHLKKESDGVTTTYAVKDFENNQNYMVEWNTSNSDICCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILQRWTNAAMSRHPIGEKLEEIQSKVRRFNDLCRRAIILGEEGSLSQESYYTALGSISEALKQCTNLNNSVENGMRPDAIATNVVCNVEYQPFITSNNKVPDPTTAKKTVRSDVAGTGRSPGTVENSEGNKGKVSQLEAVSRKDGFQEMEPTDLRSHNVMPMQFHSMVPPLFHNVSPPFHTAASTHLHENRLPR* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2707 744 SMART 26again6 517 544 IPR006564 GO:0008270
Lja3g2707 744 Pfam SWIM zinc finger 512 540 IPR007527 GO:0008270
Lja3g2707 744 MobiDBLite consensus disorder prediction 669 684 - -
Lja3g2707 744 Pfam MULE transposase domain 227 320 IPR018289 -
Lja3g2707 744 MobiDBLite consensus disorder prediction 648 686 - -
Lja3g2707 744 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Lja3g2707 744 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Lja3g2707 744 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 705 - -
Lja3g2707 744 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 705 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2707 Lja-Chr3 39293706 39298989 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g2707 MULE 1.5e-26 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4277 3 82744969 82751981 Lja3g2707 3 39293706 39298989 PCT