Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2699 ATGGAGAGTGCTGGAACTGGTGCTTCCGGAGTCGTTGACTTAGACAAGATGACGGAGACACTGGAACCGGAGAAGTCTTCAGGTGGCGGTCTCTATGTTCCTGGGAAGGATAGAGTGGTGTACGTTGCTCCCGAAAGAAAATCTCGCTTAGGACTTGATGCCCTTGCGAGTGCGAAACGGGGAGGGGCTCAGTATGATGGGGGATTCAAGGTGCCTAAAGAAAGAACCATGTCTATTGCGGCCTCGGCGGATGATGAGGATAAGTCTGAGAGTTCTGTTGTTGATGATGGTGGGCATGCCGGTACACGCAGACATGCTAAGAGGAGGTATCGTGAGACAATCAGTGAAACGTCGCGTGCAGAAAGTTCTCTGTCTGAAGATCGCTATGGTGATACACCGGGGTCCCGATCAACTGAGCATATGGGTTCAGATGTCCGTGCCTCGCCTTCTGAATATGACAGGGAGGACCGTAGGAGTGAGAGGAGGCATTCCAGGGATGATTCAAGAAGTGGTAGTAACAGAGTGCGGCATAGAGACACTTATGAAAGTAGGGAATCTTATTCAGAAAGGGATTCCCGTAGTCGGTATGACCATGAATATGGTAGGAAGCGAAACAGATATGAAGGTTCCAGAAGAACGCCTGGCAGGTCTGACTGGGATGATGGTAGATGGGAATGGGAAGATACTCCACGGAGAGATAGTTCTAGACGTCATCAACCTTCACCATCCCCAATGTTCGTTGGTGCCTCACCTGATGCACGATTAGTTTCTCCATGGTTGGGGGGCCACACTCCCCATTCATCATTTACTTCATCTTCACCATGGGACCATGTTTCTCCCTCTCCTATTCCAATACGTGCTTCAGGATCCTCAGTCAAATCTTCTCTTTCTGGACATAATGGAAGGTCACATAGACCGAATTTTTCTTCAGGAACTTCAAATACATATGAGGATGAAGTAGCGGATAGGTCCTTGGGTGAAGAGCACAAGTATGAGATTACTGAAAGCATGCGCCGAGAGATGGAATACGATGCTGACCGAGCATGGTATGATAGAGAGGAAGGTAGCACAATGTATGAGGCTGATAATTCATCAGTGTTTCTTGGAGATGAGGCTTCCTTTCAGAAAAAAGAGGCAGAGTTGGCCAAAAGACTGGTCCGAAGAGATGGGACTAAGATGTCACTTGCTCAGACCAAGAAATTGTCTCAGCTCACAGCTGATAATGCTCAGTGGGAGGACCGGCAATTACTGAGATCAGGAGCGGTTAGAGGTACAGAGGTTCAGACTGAATTTGATGATGAGGATGAACGCAGGGTTATTCTGCTTGTGCATGATACAAAGCCTCCTTTTCTTGATGGCAGAGTTGTTTATACTAAGCAGGCAGAGCCAATAATGCCAATAAAAGATCCAACATCTGACATGGCTATAATTTCTCGTAAAGGATCTACTTTGGTCCGAGAAATCCATGAGAAGCAGAGTTCGAATAAGTCTCGCCAACGCTTTTGGGAACTAGCAGGCTCAAAACTTGGTAATATCTTAGGAGTTGAAAAGACAGCAGAACAGATAGATGCAGACACTGCAACAGTGGGTGAAGATGGGGAAATAGATTTTAAGGAGGAAGCAAAGTTTTCACAGCACTTGAAGAAGGGAGAAGCTGTGAGTGAGTTTGCTAAGTCAAAAACCATGGCAGAGCAAAGGCAATATCTGCCAATTTTTTCAGTGCGAGAAGAGTTATTACAGGTGATTCGTGAAAATCAGGTGGTGGTAGTGGTTGGAGAAACTGGTTCAGGAAAAACAACGCAATTGACACAGTATCTTCACGAGGATGGCTTTACTATAGGTGGCATAGTAGGTTGCACCCAACCAAGGCGTGTGGCAGCTATGAGTGTTGCTAAGAGAGTTAGCGAGGAGATGGAAACAGAGTTGGGCGATAAAGTTGGTTATGCTATCCGTTTTGAAGATGTGACGGGGCCAAATACCATTATAAAGTACATGACAGATGGGGTACTTCTACGTGAAACACTCAAAGACTCTGAACTAGACAAATACCGGGTTATTGTCATGGATGAAGCCCATGAAAGATCATTAAGCACAGATGTTCTTTTTGGAATATTGAAGAAAGTTGTAGCTCAACGTCGTGATTTCAAGCTTATCGTCACTTCAGCAACTCTGAATGCAGAGAAATTTTCAAATTTCTTTGGAAGTGTGCCTGTTTTTAATATTCCTGGGAGGACATTTCCGGTGAATATATTATGGAGTAAAACCCCATGTGAAGATTATGTTGAAGGTGCAGTGAAGCAGGCTATGACTATTCACATAACCAGCCCTCCAGGTGACATCCTTATCTTCATGACTGGCCAAGATGAGATTGAGGCAGCTTGCTATGCCCTTGCTGAAAGAATGGAGCAGATGGTGTCATCTGCAAAGAAAGAAGTCCCTAAACTATTGATTCTTCCCATATACTCTCAACTTCCTGCTGACTTGCAAGCAAAAATATTTGAGAAAGCTGAAGATGGAGCCCGTAAATGCATTGTCGCCACTAATATTGCAGAGACATCGTTGACTGTTGATGGTATCTACTATGTCATAGATACAGGCTATGGTAAAATGAAGGTGTATAACCCTAGGATGGGTATGGATGCTCTCCAAGTCTTCCCTGTTAGCCGTGCTGCTGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGACCTGGTACGTGCTATCGCCTGTATACTGAGAGTGCTTACCTAAATGAAATGTTGCCCAGTCCTGTTCCAGAAATTCAAAGGACTAACCTTGGCAATGTGGTCTTGCTGCTGAAATCTCTTAAAGTTGAAAACTTACTTGATTTTGATTTCATGGATCCACCTCCACAAGATAATATTCTCAACTCTATGTACCAGCTGTGGGTATTGGGGGCCCTTAACAATGTAGGGGGATTAACTGATCTTGGCTGGAAAATGGTTGAGTTTCCACTTGACCCTCCGCTTGCTAAGATGCTTTTGATGGGTGACCAGTTAGGGTGTCTAGAGGAGGTTTTGACAATCGTTTCCATGCTTTCAGTACCGTCTGTTTTCTTCAGACCCAAGGACCGAGCAGAGGAGAGTGATGCTGCACGTGAAAAGTTTTTTGTTCCAGAATCCGATCACTTAACCTTGTACAACGTTTATCAGCAATGGAAACAACATAGTTACAGAGGTGATTGGTGCAATGACCATTTTTTGCATGTCAAAGGTCTGAAAAAGGCTAGAGAGGTGAGATCTCAGCTGCTTGATATTCTCAAGACTCTAAAGATTCCCTTGACTTCATGCTTTCCTGATACAGACATTGTCAGGAAAGCAATTTGTTCTGCATACTTCCACAATTCAGCAAAATTAAAGGGTGTAGGAGAATATGTCAATAGCAGGAACGGGATGCCATGTAATCTTCACCCCAGTAGTGCTCTATATGGCATGGGTTGCACTCCTGAGTATGTGGTTTATCACGAGCTAATCCTGACCTCAAAGGAGTACATGCAGTGCGCCACAGCAGTGGAGCCCCATTGGCTGGCTGAGCTAGGACCCATGTTTTTCTCTGTTAAGGAGTCTGATACATCATTGCTTGAACATAAGAAGAAACAAAAACAAGAGAAAACGGCCATGGAGCAGGAGATGGAGAATTTGAAGAAGGTACAAGCAGAGCTTGAGCAAGAAAGGAAACAGAAAGAGAAGGAAAAGATGGCTCAGCATCAGCAGCAAATTTCCATGCCAGGTTTACGAAAGGGTTCTTCCACATACTTGAGACCAAAGAAGTTTGGTCTGTAA 3804 0.4487 MESAGTGASGVVDLDKMTETLEPEKSSGGGLYVPGKDRVVYVAPERKSRLGLDALASAKRGGAQYDGGFKVPKERTMSIAASADDEDKSESSVVDDGGHAGTRRHAKRRYRETISETSRAESSLSEDRYGDTPGSRSTEHMGSDVRASPSEYDREDRRSERRHSRDDSRSGSNRVRHRDTYESRESYSERDSRSRYDHEYGRKRNRYEGSRRTPGRSDWDDGRWEWEDTPRRDSSRRHQPSPSPMFVGASPDARLVSPWLGGHTPHSSFTSSSPWDHVSPSPIPIRASGSSVKSSLSGHNGRSHRPNFSSGTSNTYEDEVADRSLGEEHKYEITESMRREMEYDADRAWYDREEGSTMYEADNSSVFLGDEASFQKKEAELAKRLVRRDGTKMSLAQTKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERRVILLVHDTKPPFLDGRVVYTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQSSNKSRQRFWELAGSKLGNILGVEKTAEQIDADTATVGEDGEIDFKEEAKFSQHLKKGEAVSEFAKSKTMAEQRQYLPIFSVREELLQVIRENQVVVVVGETGSGKTTQLTQYLHEDGFTIGGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSELDKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAEKFSNFFGSVPVFNIPGRTFPVNILWSKTPCEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQMVSSAKKEVPKLLILPIYSQLPADLQAKIFEKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLDPPLAKMLLMGDQLGCLEEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLYNVYQQWKQHSYRGDWCNDHFLHVKGLKKAREVRSQLLDILKTLKIPLTSCFPDTDIVRKAICSAYFHNSAKLKGVGEYVNSRNGMPCNLHPSSALYGMGCTPEYVVYHELILTSKEYMQCATAVEPHWLAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEQEMENLKKVQAELEQERKQKEKEKMAQHQQQISMPGLRKGSSTYLRPKKFGL* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2699 1267 Coils Coil 1204 1246 - -
Lja3g2699 1267 SMART helicmild6 799 903 IPR001650 -
Lja3g2699 1267 Pfam Helicase conserved C-terminal domain 774 903 IPR001650 -
Lja3g2699 1267 MobiDBLite consensus disorder prediction 1227 1242 - -
Lja3g2699 1267 Pfam DEAD/DEAH box helicase 574 728 IPR011545 GO:0003676|GO:0005524
Lja3g2699 1267 Gene3D - 949 1105 - -
Lja3g2699 1267 MobiDBLite consensus disorder prediction 146 238 - -
Lja3g2699 1267 MobiDBLite consensus disorder prediction 1227 1267 - -
Lja3g2699 1267 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1111 1188 IPR011709 -
Lja3g2699 1267 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16 402 1193 - -
Lja3g2699 1267 SMART ultradead3 567 751 IPR014001 -
Lja3g2699 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 579 742 IPR014001 -
Lja3g2699 1267 MobiDBLite consensus disorder prediction 79 102 - -
Lja3g2699 1267 SMART ha2_5 964 1054 IPR007502 GO:0004386
Lja3g2699 1267 MobiDBLite consensus disorder prediction 128 144 - -
Lja3g2699 1267 MobiDBLite consensus disorder prediction 263 319 - -
Lja3g2699 1267 MobiDBLite consensus disorder prediction 109 126 - -
Lja3g2699 1267 Gene3D - 520 744 IPR027417 -
Lja3g2699 1267 Gene3D - 745 922 IPR027417 -
Lja3g2699 1267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 764 944 IPR001650 -
Lja3g2699 1267 Pfam Helicase associated domain (HA2) 966 1052 IPR007502 GO:0004386
Lja3g2699 1267 PANTHER ATP-DEPENDENT RNA HELICASE 402 1193 - -
Lja3g2699 1267 CDD SF2_C_RHA 746 911 - -
Lja3g2699 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 1098 IPR027417 -
Lja3g2699 1267 MobiDBLite consensus disorder prediction 1 34 - -
Lja3g2699 1267 MobiDBLite consensus disorder prediction 61 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2699 Lja-Chr3 39042245 39052007 Transposed