Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2696 ATGGGTTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGAATCAAACCTTGCTTCAAGATCAAGACTTGGAGCTTCCAAACCCTCTTCCTATGAGGAAACAACAACCAAAACAACAGCAACAATCTCAGCAATCAGAGGCTTTGAAGTGTCCAAGATGTGATTCAACAAATACCAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTACTGCAGAGCTTGTAAGAGGCACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGTCAGGAAGAACAAGAAGATCAAGAAATCAACAACTTCTCCATCCTCTGGCACCACCACCACTTCTATTAGCACCACCACCACCTCTAATGGCAAAAATGATGTTGATTTCAACGCTCCTCTTGCAGTCACTGATCAGAAAAGCATACCTTCTTCTCTCTATCAACCTCTGATGCAACAGGATCTGATGAGTACCAGAGTCGACTCTGAATGTGAAGACTTGGGTATTGGTAATGGTATGTTTCTGAGTTCAAATGGGCCATTTCCTCAAAACCAGAGCTTTCTCTTCCCTTTCTCAACCTCATGTTCTTTTGACACAAACCCATGTGCTGCAGTGTCAACCCCTATGAGATCATCCAATGTGTATAACTATGGTGAAGAATTTAAATTAATGGAGGAGCCAACCATCAACACTGGTGATAATAACACACAGGCATGGGAGATACCTGCTGCAACAAGTACTACTAACATGGAAATGCCAAACTATTGGAGTTGGGAGGATATTGATTCTTTAGTCTCAACTGATCTGAATGTTCCTTGGGATGATTCTGATGTTGTCAAACCCTGA 858 0.4219 MGLSSKQVSNRGLDWNQTLLQDQDLELPNPLPMRKQQPKQQQQSQQSEALKCPRCDSTNTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGVRKNKKIKKSTTSPSSGTTTTSISTTTTSNGKNDVDFNAPLAVTDQKSIPSSLYQPLMQQDLMSTRVDSECEDLGIGNGMFLSSNGPFPQNQSFLFPFSTSCSFDTNPCAAVSTPMRSSNVYNYGEEFKLMEEPTINTGDNNTQAWEIPAATSTTNMEMPNYWSWEDIDSLVSTDLNVPWDDSDVVKP* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2696 285 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g2696 285 MobiDBLite consensus disorder prediction 1 51 - -
Lja3g2696 285 MobiDBLite consensus disorder prediction 107 132 - -
Lja3g2696 285 PANTHER OS06G0284500 PROTEIN 37 185 - -
Lja3g2696 285 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Lja3g2696 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 185 IPR045174 GO:0003700|GO:0006355
Lja3g2696 285 MobiDBLite consensus disorder prediction 100 132 - -
Lja3g2696 285 MobiDBLite consensus disorder prediction 34 51 - -
Lja3g2696 285 Pfam Dof domain, zinc finger 48 103 IPR003851 GO:0003677|GO:0006355
Lja3g2696 285 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2696 Lja-Chr3 38972838 38974472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2696 34 128 C2C2-Dof Transcription Factor Family AT1G51700 53.684 2.21e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g2696 zf-Dof 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2696 - - gmx:778119 364.77