Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2655 ATGGATGAAAACTCCCCCATGTCCATCATCGACATCATGATCGAAGTCTGGATCATCATTGATTTCATTATAAATATCATTTTGGTTGCATATTTTGATGCAAGAACTAACCTTATGGTTACTGATCACATGAGCATCGCTAGAAGGTATGTATGCAACAATTGGTTTGGATTAATTTGCGATGCTTTAGCGTTCATGTACCGCTTCCACTTCTGGGGTCATCGAAGCATCTGGGGCTTCATCTTTAAGATGATTCGATTGTGGCGTCTTTTCCTGCTCCATTCATATTTCACAAGACTGGAAAAGGATGTGAAGAACAATTACTTTTTGATTAGGATCTTCAAAATTATTTGTATTACCTTATTAGCTCTTCATTGTGGAGGCTGCATTAGCTATGCTATTGCTGATAGGCATCCAGATCCAAAAGAGACTTGGATTGGATCAAAACATGCTGACTTCAAGAAATCAACACTCTTGGTGAAGTATGTCACCTCACTGTATTGGTCTACAGTGACATTCAATACAACGGGTTTTGGGGATTTTTCAGCAAAAACCTTCTCAGAGATGGTTTTTATCATCGTGTATCTCCTCTTCGCAAGTGGACTTTCTCTTTACATTGGAGCTTGCATCATTGAACTAATAGTCCGCAACACAATTGCGACAATGAACTTCAGAGACAAAGTTACTGAAGTCTCAGATTTTGCATTGAGAAATCACCTGCCTCAAGATCTTCAAGATCTCATGTGGTCACATCTCAGTGTGGAGTTTGAGTCTCAAAATAAGAAGCATCAACTTGTGATGAGTAGCCTGCCTAGAGGAATTCGGACGAAAATTGCAGTGCATTTGTATTTAGAAGTTGTGAAGAAATCCATCCTCTTCCAGAATGTCCCACAAGTCGAAGACTTTCTTTCGTCACTGGTGCCAGAAATGGAACCAGAGTACTTTGACCGTGACGAAGAGGTTATATCAGTTAAGGAGTGTAATTCACACATCTATATACTTGTTTCTGGGGATGTGAAACTCACGTGGGATGTGGCTATTGCTCAGGATCCCTTTGATAATGATGGAGCTGATGTTGTTGAGATTCTAATTCCTCGGCAGCTGCCGTCCACTGGTCAAGGATTTACGTTTGGAGAAGTTGGAGCTATGTTTAAGAGGGGGCTAATCATTGCTCGAACCTTGGAGATTTCTCACTTTATAAAACTGAGCAGGAAAGCACTCGTGAATGCCATAGAAGCGAATCCAAGGGCCGGACCACCGATCATGCAAAATCTCGTAGATATGACAGACCGATATCGATGGTTGCCTGATCCATTTCCAGATCCGACAAGAACTCCTCATCATATACTGCATGGATTATGCACTGGAGGGTGTGATTGCCCTGCATGTACCAAGATTCGTGAAGCATTTCCTGTTGTGGATGCACCGAATCAATAG 1437 0.4161 MDENSPMSIIDIMIEVWIIIDFIINIILVAYFDARTNLMVTDHMSIARRYVCNNWFGLICDALAFMYRFHFWGHRSIWGFIFKMIRLWRLFLLHSYFTRLEKDVKNNYFLIRIFKIICITLLALHCGGCISYAIADRHPDPKETWIGSKHADFKKSTLLVKYVTSLYWSTVTFNTTGFGDFSAKTFSEMVFIIVYLLFASGLSLYIGACIIELIVRNTIATMNFRDKVTEVSDFALRNHLPQDLQDLMWSHLSVEFESQNKKHQLVMSSLPRGIRTKIAVHLYLEVVKKSILFQNVPQVEDFLSSLVPEMEPEYFDRDEEVISVKECNSHIYILVSGDVKLTWDVAIAQDPFDNDGADVVEILIPRQLPSTGQGFTFGEVGAMFKRGLIIARTLEISHFIKLSRKALVNAIEANPRAGPPIMQNLVDMTDRYRWLPDPFPDPTRTPHHILHGLCTGGCDCPACTKIREAFPVVDAPNQ* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2655 478 SUPERFAMILY Voltage-gated potassium channels 85 251 - -
Lja3g2655 478 Gene3D Jelly Rolls 262 434 IPR014710 -
Lja3g2655 478 PRINTS EAG/ELK/ERG potassium channel family signature 188 199 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2655 478 PRINTS EAG/ELK/ERG potassium channel family signature 162 179 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2655 478 PRINTS EAG/ELK/ERG potassium channel family signature 11 21 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g2655 478 CDD CAP_ED 292 415 IPR000595 -
Lja3g2655 478 Pfam Ion transport protein 5 201 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja3g2655 478 Gene3D - 1 216 - -
Lja3g2655 478 SUPERFAMILY cAMP-binding domain-like 221 426 IPR018490 -
Lja3g2655 478 ProSiteProfiles cAMP/cGMP binding motif profile. 300 386 IPR000595 -
Lja3g2655 478 PANTHER POTASSIUM CHANNEL AKT1 5 428 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2655 Lja-Chr3 36702660 36708065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2655 9 425 Ion Channels AT5G46240 40.426 1.22e-90 288