Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2638 ATGGATCTCATCATTTCACACAGCCCAAACCCACTTTTTGTTTCCTCATCACCATTTCCCTCAACCTCTCAAAATCCCACCTTTTTAACGTTTGCCGCACCCTACTCCCGTCGCAGAAAGCTCAAGTTTCGAGCTTCAGCGAGCGCAGACCCAAATGGCGCTGGTGCGTCTTCTTGGTTCCAACCGTTGCAACGCGCTTCGAGGCGGTTTTGGGTGAAATTTGGGGATTTGGTGAAGAAGGAGACGGGTGTTGACTTGGAGGATGGTGCTGTGAAGTTGGGTGAGTTTGTGGATGGTGTGAAGTATAATGGAGATGAATTTGGAAGGATTGGGACTCGTTCGGTGACTCAGTTTGTCGATTGGAACCGGTTGGAGCGTTGGAAGGATCTCAAGAACTGGGAACCTAAGAGAATTGGTGCATTAGTTCTTTATATCCTTGTTGTGGCATTTGCTTGTAGAGGAGTATATGTAGCAATTCAAGCACCTTACCTAAATCGCCAAAGAAAAGAATTGACTGAAGCTTACATGGAAGCTTTGATTCCTGAGCCGTCTCCCAGTAATATTAGAAGATTTGAGAAGGGTATGTGGAAGAGGACAATGCCGAAAGGCCTGAAAATGAAAAAGCTAATCGAAAGGCCTGATGGAACACTTGTTCATGATACTACATATGTTGGGGAGGATGCATGGGAGGATGATCAAGAAACTCCTGAAGAACATGTAAAGCAAATTATAAAGGATGATGAAAGATTAAACAGACAAGAGAAGAAAGAACTAACCAAAGACTTGGGCATTTCAGGTGAAGTTCAAATTGAGGGTACATGGCGTGAGAGACTTCATAAATGGAAGGAGATCCTTAGAAAAGAACGCCTTGTTGAGCAACTGGATTCCTTAAATGCCAAATATGTAGTTGAGTTTGACATGAAAGAGGTTGAAAATAGTCTTCGCAAGGATGTGGCAGAAAAGGCGACAGCCACTCCGGGAACAAGGGGTCTGTGGATAGCTAAGAGATGGTGGCGCTATCGTCCTAAACTTCCTTACAATTATTTTCTTGAAAAACTTGATAGTTCTGAGGTAGCAGCTGTTGTCTTTACTGAAGACTTGAAAAGATTGTACGTGACAATGAAAGAAGGTTTCCCTTTGGAGTATGTTGTTGATATTCCTCTTGATCCACATATGTTTGAGATTATTACAAGTTCTGGAGTTGAAGTAGATCTCCTTCAGAAGCAACAGATCCATTATTTTATGAAGGTTGTGATTGCATTATTACCTGGAATACTAATTCTCTGGCTTATAAGGGAGTCTATGACACTTCTACTCATCACTTCCAAACGCTTTCTTTACAAGAAGTATAATCAACTCTATGATATGGCTCATGCAGAAAATTTTATCATGCCAGTTGGAGATGTTGGTGAAACAAAATCTATGTACAAGGAAGTTGTGTTGGGGGGTGACGTTTGGGATCTTCTTGACGAGTTGATGATCTATATGGGAAATCCTATGCAGTTCTATGAAAAGGATGTGAATTTTGTTCGGGGTGTTCTACTCTCTGGACCTCCAGGAACAGGAAAAACTCTTTTTGCCAGGACACTTGCAAAAGAAAGTGGACTGCCTTTTGTTTTTGCTTCTGGTGCTGAGTTCACAGATAGTGAAAAAAGTGGAGCTGCCAGAATTAATGAGATGTTTTCCACTGCCAGGAGAAATGCACCTTGTTTTGTATTTGTAGATGAAATAGACGCCATTGCTGGAAGACATGCTAGGAACGATCCACGTAGAAGGGCAACTTTTGAGGCTCTTATTACACAGCTTGACGGGGAGAAGGAAAAAACTGGTGTTGACCGTCATTCCCTCAGACAAGCTATCATATTCATCTGTGCCACAAACAGGCCTGATGAATTAGATCTTGAATTTGTTCGACCTGGACGTATTGATCGTCGTCTATACATAGGTTTGCCTGATGCGAAGCAAAGAGTCCAAATTTTTGGTGTGCATAGTTCTGGAAAGCAACTTGCAGAGGATGTGAATTTCGAAAAGCTTGTGTTCCGTACTGTTGGATTCTCTGGAGCGGATATAAGAAACCTTGTCAATGAAGCTGCAATAATGTCGGTGAGAAAAGGGCATTCCAAAATTTTCCAGCAAGACCTTATAGATGTACTAGATAAACAATTGCTTGAGGGTATGGGAGTCCTTCTCACTGAGGAGGAGCAGCAGAAATGTGAAGAAAGCGTATCTTTTGAAAAGAAGAGACTGCTTGCTGTTCATGAAGCTGGTCATGTTGTGCTAGCGCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCGCAGCTCCTACCCGGTGGTAAGGAAACTGCAATATCTGTATTCTATCCTCGAGAAGATATGGTAGACCAAGGTTATACCACATTTGGTTACATGATGATGCAAATGGTAGTGGCTCATGGTGGTCGATGTGCTGAACGTCTTGTATTTGGCGATGATATAACTGATGGAGGAAGAGACGATCTAGAAAAGATAACAAAGATTGCTAGGGAGATGGTAATCAGTCCTCAAAATTCAAGGTTGGGGTTAATAGCTTTAACAAAAAGGATTGGCTTAGTTGATCGACCAGACAGTTCAGATGGCGAGATGATAAGATATAGATGGGATGACCCTCAAGTGATTCCTGCTAATATGACACTTGAGGTATCTGAGCTCTTTACGCGGGAGTTGACAAGGTATATTGAAGAAACTGAAGAACTTGCAATGAATGCTTTGAGGGATAATAGGCATATCCTGGACTTGGTTACAAGGGAGCTATTGGAGAGGTCAAGAATAACTGGATTGGAGGTTGAAGAAAAATTGAAGGGACTATCGCCAGTAATGTTTGAGGACTTTATAAAGCCATTCCAGATAGACTTAGATGAGGATGGGCCACTTCCGCATAATGATCGTGTACGGTATCAGACACCGAACCTGTATCCTGCTCCTCTCCATAGATGTTGA 2979 0.423 MDLIISHSPNPLFVSSSPFPSTSQNPTFLTFAAPYSRRRKLKFRASASADPNGAGASSWFQPLQRASRRFWVKFGDLVKKETGVDLEDGAVKLGEFVDGVKYNGDEFGRIGTRSVTQFVDWNRLERWKDLKNWEPKRIGALVLYILVVAFACRGVYVAIQAPYLNRQRKELTEAYMEALIPEPSPSNIRRFEKGMWKRTMPKGLKMKKLIERPDGTLVHDTTYVGEDAWEDDQETPEEHVKQIIKDDERLNRQEKKELTKDLGISGEVQIEGTWRERLHKWKEILRKERLVEQLDSLNAKYVVEFDMKEVENSLRKDVAEKATATPGTRGLWIAKRWWRYRPKLPYNYFLEKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYVVDIPLDPHMFEIITSSGVEVDLLQKQQIHYFMKVVIALLPGILILWLIRESMTLLLITSKRFLYKKYNQLYDMAHAENFIMPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYEKDVNFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSTARRNAPCFVFVDEIDAIAGRHARNDPRRRATFEALITQLDGEKEKTGVDRHSLRQAIIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFGVHSSGKQLAEDVNFEKLVFRTVGFSGADIRNLVNEAAIMSVRKGHSKIFQQDLIDVLDKQLLEGMGVLLTEEEQQKCEESVSFEKKRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERLVFGDDITDGGRDDLEKITKIAREMVISPQNSRLGLIALTKRIGLVDRPDSSDGEMIRYRWDDPQVIPANMTLEVSELFTRELTRYIEETEELAMNALRDNRHILDLVTRELLERSRITGLEVEEKLKGLSPVMFEDFIKPFQIDLDEDGPLPHNDRVRYQTPNLYPAPLHRC* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2638 992 Gene3D - 652 725 - -
Lja3g2638 992 Pfam Peptidase family M41 742 943 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja3g2638 992 Gene3D Peptidase M41 735 950 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja3g2638 992 PANTHER ATP-DEPENDENT PROTEASE 14 992 - -
Lja3g2638 992 SMART AAA_5 509 652 IPR003593 -
Lja3g2638 992 CDD AAA 511 650 - -
Lja3g2638 992 SUPERFAMILY FtsH protease domain-like 744 956 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja3g2638 992 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 720 IPR027417 -
Lja3g2638 992 Pfam AAA+ lid domain 672 714 IPR041569 -
Lja3g2638 992 Pfam ATPase family associated with various cellular activities (AAA) 513 649 IPR003959 GO:0005524|GO:0016887
Lja3g2638 992 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 14 992 - -
Lja3g2638 992 Gene3D - 470 651 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2638 Lja-Chr3 36211939 36227579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2638 476 877 Miscellaneous Gene Families AT5G53170 32.274 4.90e-56 206