Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2633 ATGTCAGTGTTGATCGTGACAAGCTTAGGAGACTTGGTGATTGATTTACACACCCAAAAGTGCCCCTTGACCTGCAAGAACTTCTTGAAGCTTTGCAAGATTAAGTACTACAATGGCTGTCTATTCCACAATGTTCAAAGGGATTTCACTGCTCAGACCGGTGATCCAACTGCAACTGGAACCGGTGGTGATTCCATCTACAAGTTTCTTTATGGTGAACAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATCTGAAGCATTCTAAGACTGGAACAGTTGCCATGGCAAGTGCAGGAGAGAATCTGAATGCTTCACAGTTTTATTTCAGTCTGCGGGATGACCTTGATTACCTTGATGGGAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTAGAATAAATGAGGCATATGTGGATGAGAAGAGCAGACCATATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTTTGATGATCCTCCTCAGCTAGCCGACCTCATTCCTGGAGCTTCACCAGAAGGAAAACCTAAAGAGGAGGTTGATGATGATGTGCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGCAGAGCTTGAGGAGGTTATTAGAACAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGTGATATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTACTATTTGTCTGTAAATTGAACCCGGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTGTCATCGGCTGACATCATCCGTGATCAAAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACAGGCTTGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGTCAAAACTGTGGTCACAATATAAGCGGAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTACTGATCATATTGCTAAGGATTGCACTGGAGATGCTAAACAACAATCTGCAAAATACATCTTGAAGGACAATAATGTCCAACGTGGCGGAGATAATGCAAGATACGAAATGGTTTTTGAAGGGGATAACCCTGAAAGTCCTAGGCGAGATACAAAACACCAAAGGCATGACCGGGATGACCGAGTTGAGAAAACAGGTAGAAAGGAAAACTTTAAAGATCATATTCATAGAGGTCGTAGGGATCCGGAGATGGTGGGCTCAAACAACAGAGATAGGTATGGTGATAGAAGCCGAGGGAATGAGGGAAACGGAGATGATAAATCTCGATCTGAAAGAGGTGCAAGAGATACAAGAGATTCGGGTTCGCATGCCAACACAAGACAGAGAGATGATGACTACAGGCGTGAAGATGAACTAGACTCGAGAAAAAGAGACTTGGATGATAGCTACACAGAAAGACGGGCTAGTCGTGATGATAGAAGAAAAACAGATACTGATCATATGGACAGAAAGAATGACAGAGATTATAGGAGGAGAACTGAAGACAGTGGAAGGGAAGATGTGAAGATTGATTCCAGACGAAGAAAACGAAGCCCGGATGATAAAGATTACAAACATAGAAGGGAAGATGAAGATTACAGACGCAGAAGGGATGAACGTAGAGACAGGAGACAAGATACTGAATCTGATGAATATTCTCATCGAAGGCATCATGGTGATAGGGGATGA 1767 0.4216 MSVLIVTSLGDLVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHNVQRDFTAQTGDPTATGTGGDSIYKFLYGEQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYFSLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKSRPYKNIRIKHTYILEDPFDDPPQLADLIPGASPEGKPKEEVDDDVRLEDDWVPMDEQLNPAELEEVIRTKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSADIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYKRKDQKGKGGGCFKCGSTDHIAKDCTGDAKQQSAKYILKDNNVQRGGDNARYEMVFEGDNPESPRRDTKHQRHDRDDRVEKTGRKENFKDHIHRGRRDPEMVGSNNRDRYGDRSRGNEGNGDDKSRSERGARDTRDSGSHANTRQRDDDYRREDELDSRKRDLDDSYTERRASRDDRRKTDTDHMDRKNDRDYRRRTEDSGREDVKIDSRRRKRSPDDKDYKHRREDEDYRRRRDERRDRRQDTESDEYSHRRHHGDRG* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2633 588 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 499 IPR035542 -
Lja3g2633 588 Gene3D - 1 172 IPR029000 -
Lja3g2633 588 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Lja3g2633 588 SUPERFAMILY Cyclophilin-like 1 173 IPR029000 -
Lja3g2633 588 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Lja3g2633 588 MobiDBLite consensus disorder prediction 384 588 - -
Lja3g2633 588 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Lja3g2633 588 MobiDBLite consensus disorder prediction 387 588 - -
Lja3g2633 588 SUPERFAMILY Retrovirus zinc finger-like domains 330 361 IPR036875 GO:0003676|GO:0008270
Lja3g2633 588 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Lja3g2633 588 CDD cyclophilin_RRM 4 169 IPR035538 -
Lja3g2633 588 SMART rrm1_1 244 317 IPR000504 GO:0003723
Lja3g2633 588 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Lja3g2633 588 SUPERFAMILY RNA-binding domain, RBD 229 339 IPR035979 GO:0003676
Lja3g2633 588 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Lja3g2633 588 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Lja3g2633 588 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Lja3g2633 588 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Lja3g2633 588 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Lja3g2633 588 CDD RRM_PPIL4 240 322 - -
Lja3g2633 588 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Lja3g2633 588 Gene3D - 182 331 IPR012677 -
Lja3g2633 588 Gene3D - 333 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2633 Lja-Chr3 36150073 36160562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2633 7 166 U-box Gene Family AT5G67530 42.500 6.34e-32 128