Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2632 ATGGAAGAATTTAACTGGTGGCTATCCTTATACATGAATGAAAATGTGAACCAAGACTTTGCCATCAGAAGGTTTTGCCCTGCAAGAATGGAGCTAGAGCAAGGAGAAGAAGAGTGCCAGGACCAAGAAGCATTTCTTGATCATGAGATTGAACTATGGTCTTCTTCTGATGCAACAACCACCACCACTCCTTGTTTACCTTCTTCAGAGAATATTGATGACTTTGTTGATAGCTTCATTAACATGGATCAGTATGATTATGACAATGAAGATCATCACCAAGAGTCCACAGAGAACAAAAGTTTTGATCATCACTTTGCTGAGGCTGATGCATACTCTATGGTGAATGAAGAAGTGGAGATCTATGGAGATGTTACAATCACCATGGAGGAGGAGGAAGAAATTGAAATGACAGGCTCTTTTGGTGCAAGATCTGAACTTGTGCCTTGTGCAGAAGATGCAAATCTTGCCATGGATCAAGGATTAGACTTGGTTCACATGCTTTTGGCATGTGCTGAAGCTGTTGGATGCAGAGACACACAGCAAGCAGAGTTTCTACTCAGCAGAATTTGGGCCTTGGCAAGTCCTTCAGGAGATTCATTGCAAAGAGTCTCTTACTGTTTTGCCACAGGATTGAAGTGCAGGTTATTACTTCTTCCTCAAAGTGCCATTGCAAATGGCACATTCACAAGATCCTCTATGAATGTCCCTTTGATCACTAGGGAGAATAAGTTGGAAGCTTTTCACCTCCTTTACCAAACAACACCTTACATTGCCTTTGGTTTCATGGCTGCAAATGAAGCTATCTTCCAAGCATCAAAAGGAAAAAGCTCCATACACATAGTTGACCTTGGAATGGAGCATACTCTTCAGTGGCCTTCACTGATAAGAGCCCTTGTTTCAAGGCCTGAGGGGCCTCCAAAGCTCAGGATCACTGGATTAATCAGAATTGAAGACAACAACCCAAAACTTCAAACTAGAATCAATGCACTTCTAGAGGAAGCAAGCTCATTGGGAATGCCTCTTGAATTCCACATAATATCAGAGGATTTAACTCCATCTCTTCTTACTGTGGAGAAGCTGAACTTAAGAGATGGAGAAGCTTTATTTGTTAACGGCATCTTGCAGTTGCACAAACATATCAAGGAAAATAGAGGCTATTTGAAGGAAATTCTCCAATCAATAAAGAAGCTAGGTCCAACAGCAATTACAGTGGTGGAGCAAGATACAAACCACAATGGTCCTTTCTTCCTTGGGAGGTTTTTGGAGTCACTGCACTATTACTCGGCTATATTTGATTCTCTTGAGGCAAGCATGCCAAGGAATAGCCAACAGAGGGGGAAGATAGAGAGATTACACTTTGCAGAGGAGATTCTTAATATTATAGCTTATGAAGGTGCTGATAGAATGGAAAGACATGAAAGGGTAGACCAATGGAGAAGACAATTAGGCAGAGCAGGGTTTCAGGTAATGCCACTGAAGTGCACAAGCCAAGCTAGAATGATGCTTTCTGTTTATGACTGTGATGGATACACATTGTCCTGTGAAAAGGGTTGCCTTCTTCTAGGGTGGAAAGGAAGGCCAGTAATGATGGCTTCGGCATGGCAAGTAGCAATGAGTGACTCGTATTTGTCCACAATTCTACGTGCAACTCAACCCTGGATCTGCCCTTTTAAAATTTTTGGAAGAAAGAGGGAGTAG 1701 0.4203 MEEFNWWLSLYMNENVNQDFAIRRFCPARMELEQGEEECQDQEAFLDHEIELWSSSDATTTTTPCLPSSENIDDFVDSFINMDQYDYDNEDHHQESTENKSFDHHFAEADAYSMVNEEVEIYGDVTITMEEEEEIEMTGSFGARSELVPCAEDANLAMDQGLDLVHMLLACAEAVGCRDTQQAEFLLSRIWALASPSGDSLQRVSYCFATGLKCRLLLLPQSAIANGTFTRSSMNVPLITRENKLEAFHLLYQTTPYIAFGFMAANEAIFQASKGKSSIHIVDLGMEHTLQWPSLIRALVSRPEGPPKLRITGLIRIEDNNPKLQTRINALLEEASSLGMPLEFHIISEDLTPSLLTVEKLNLRDGEALFVNGILQLHKHIKENRGYLKEILQSIKKLGPTAITVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASMPRNSQQRGKIERLHFAEEILNIIAYEGADRMERHERVDQWRRQLGRAGFQVMPLKCTSQARMMLSVYDCDGYTLSCEKGCLLLGWKGRPVMMASAWQVAMSDSYLSTILRATQPWICPFKIFGRKRE* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2632 566 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 539 IPR005202 -
Lja3g2632 566 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 3 539 - -
Lja3g2632 566 Pfam GRAS domain family 164 536 IPR005202 -
Lja3g2632 566 ProSiteProfiles GRAS family profile. 155 536 IPR005202 -
Lja3g2632 566 Coils Coil 314 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2632 Lja-Chr3 36121949 36123761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2632 157 537 GRAS Transcription Factor Family AT1G66350 37.692 4.16e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g2632 GRAS 1.1e-109 CL0063