Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2619 ATGGGTGTGGTGATAATCGACGGCACGACGGTGAGGGATTTCGTGAACGACGAAGCCAGTTTCACCAAGAGCGTGGACGAACAGTTCGCCGCGCTGGATCTCAACAACGACGGCGTTTTATCACGCGCGGAGCTCCGCACCGCCTTCGAGTCCATGAGGCTCATCGAGGCTCACTTCGGCATCGACGTCGCAACCCCGCCGGAGCAGCTCACCAAGATCTACGACTCTGTGTTTGATACGTTTGACGGTGATGGTAGCGGCACCGTTGACCGCCTCGAGTTCAGGTCCGAGATAAAGAAGATCATGCTCGCTGTTGCTGATGGTCTGGGAACTAACCCGATTCAGATGGCTCTTGAAGATGACTCTAACAATCTTCTTCAGAAAGCTGCGGATCTCGAAGCTTCTAAGATCGGCGCCGCCTGA 423 0.5532 MGVVIIDGTTVRDFVNDEASFTKSVDEQFAALDLNNDGVLSRAELRTAFESMRLIEAHFGIDVATPPEQLTKIYDSVFDTFDGDGSGTVDRLEFRSEIKKIMLAVADGLGTNPIQMALEDDSNNLLQKAADLEASKIGAA* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2619 140 Pfam EF-hand domain pair 27 96 IPR002048 GO:0005509
Lja3g2619 140 SMART efh_1 73 101 IPR002048 GO:0005509
Lja3g2619 140 SMART efh_1 24 52 IPR002048 GO:0005509
Lja3g2619 140 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 137 - -
Lja3g2619 140 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN 1 137 - -
Lja3g2619 140 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Lja3g2619 140 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Lja3g2619 140 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Lja3g2619 140 SUPERFAMILY EF-hand 19 102 IPR011992 -
Lja3g2619 140 Coils Coil 115 135 - -
Lja3g2619 140 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Lja3g2619 140 Gene3D - 9 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2619 Lja-Chr3 35937436 35938356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2619 1 140 EF-hand Containing Proteins AT2G44310 69.286 2.28e-69 204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2619 3 35937436 35938356 Lja3g2619 3 35937436 35938356 ECH