Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2594 ATGGCTTCCTCCACTGTCGCAACCTCCTTCCACTTTCCATGTCCATTGCTCTCTCCTTCGTCTTCATCATCTTCTTCTTCCATTTCTCAATTTCCCCTCACTCCCTTCTCCCGCAGCAAGGGTACCACAACCGCTCCTTCCCGCCAAAATACCCGCCGCATGCCCAACACCACCACACTCTCTCTCAAATCAGAACCCATGCTTCCCCCTTACAACGTTTTGATTACTGGCTCTACCAAAGGAATAGGGTATGCTTTGGCAAAAGAGTTTCTAAAAGCTGGTGACAATGTCTTAATTTGCTCAAGATCATATGAAAGGGTAGAGACTACTGTTCAGAACTTCAGAGCAGAATTTGGAGAGCAGCATGTGTGGGGAACCAAGTGTGATGTGAGAAGTGGAGAGGATGTAAAGAATTTAGTTTCATTTGCTCAAGAAAAACTGAAATACATTGATCTATGGATTAATAATGCTGGCTCAAATGCATATAGCTATAAGCCACTCGCGGAGGCATCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATTAAGATGATGGCCAGCCAGCCTCGCGGAGGTCATATTTTCAATATTGATGGAGCTGGTTCAGATGGAAGACCAACACCGAGGTTTGCTGCTTATGGAGCAACAAAGAGAAGCGTGGTGCATTTAACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTCAAAAATGTCATGGTGCATAATCTTTCGCCAGGAATGGTCACAACAGATCTTCTAATGTCAGGTGCTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCTGAACCGGCTGAAGTGGTTGCAGAATACTTGGTTCCAAACATTAGATCTATCCCCTCCAACGGACCAATGAGGCCAACATACATTCGATTCCTCACTGGTTTGAAAGCCTATTCCCAGATATTTTCAAGATTCGCATTTGGGGCAAGAAGAAACCGCTACATTCTCGAAGATTGA 1023 0.4399 MASSTVATSFHFPCPLLSPSSSSSSSSISQFPLTPFSRSKGTTTAPSRQNTRRMPNTTTLSLKSEPMLPPYNVLITGSTKGIGYALAKEFLKAGDNVLICSRSYERVETTVQNFRAEFGEQHVWGTKCDVRSGEDVKNLVSFAQEKLKYIDLWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMASQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVMVHNLSPGMVTTDLLMSGANTKQAKFFINVLAEPAEVVAEYLVPNIRSIPSNGPMRPTYIRFLTGLKAYSQIFSRFAFGARRNRYILED* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2594 340 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 30 340 - -
Lja3g2594 340 MobiDBLite consensus disorder prediction 18 60 - -
Lja3g2594 340 PRINTS Glucose/ribitol dehydrogenase family signature 198 214 IPR002347 -
Lja3g2594 340 PRINTS Glucose/ribitol dehydrogenase family signature 148 159 IPR002347 -
Lja3g2594 340 PRINTS Glucose/ribitol dehydrogenase family signature 225 244 IPR002347 -
Lja3g2594 340 PRINTS Glucose/ribitol dehydrogenase family signature 249 266 IPR002347 -
Lja3g2594 340 PRINTS Glucose/ribitol dehydrogenase family signature 72 89 IPR002347 -
Lja3g2594 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 159 IPR002347 -
Lja3g2594 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 212 IPR002347 -
Lja3g2594 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 225 244 IPR002347 -
Lja3g2594 340 CDD SDR_c 73 294 - -
Lja3g2594 340 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 212 240 IPR020904 GO:0016491
Lja3g2594 340 PANTHER CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTIC 30 340 - -
Lja3g2594 340 Gene3D - 68 295 - -
Lja3g2594 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 72 291 IPR036291 -
Lja3g2594 340 Pfam short chain dehydrogenase 73 268 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2594 Lja-Chr3 35151065 35158750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2594 73 265 Acyl Lipid Metabolism Gene Families AT1G24360 31.156 1.68e-15 74.3