Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2593 ATGGCAAAACCAGCTCCCCATTCCCATCTTCTCCTTGTAATCTTGTTTCTTTCCATAATCCATCTTTCAGAGCAATTACAATATTCTCAGTCTCAGACACTTCTCAAACTCCAGCAACTTCTTGGCTACCCCTCAGCACTAAACACCTTCACTAGCACCACCCCCAACACAGACTATTGCAACATTGAACCAACTCCATATTTGACACTAGTGTGCTATGAGGACAACTTGACTCAGCTGCATGTTGTTGGAAACAATGAGTTCACCCCATTACCTCAAAGTTTCTCTTCAGACTCACTCTTTTCCACATTGGGAACCCTCTCAAGCTTAAAAGTCCTCTCTTTGGTTTCTCTAGGGCTCTGGGGGCCTCTACCTGAAAGCATTTCTCAATTGTCTTCACTGGAAATACTTAACATCAGCTCAAATCACTTCAGTGGAGCCATCCCATTCCAGCTTTCAAAACTGAAGAATCTGCAATCTTTGGTGCTTGATGACAACAACCTGAATGATGAAATTCCCCAATGGTTTGGATCTTTTCAAGGTTTGGCTGTGCTTAGCATGAAGAAAAATTGGTTTAGTGGGAGCATTCCAAGTTCAGTGAATTCCCTTGTTACTCTTAGAGTTTTAGATCTGTCAAATAATCAGCTATCTGGGGAGCTACCTAATCTTCACAATTTGGCAAACCTTCAGGTTCTTCACTTGGAAAACAACACACTTGGACCTCATTTTCCTTCTCTGCCTAACAAGCTAGTTTCCCTTGTGCTTAGAAACAACAGCCTCAGGCTTGGTGTGCCTCCTAATATAAGTTCATTTTATCAGCTCCAAAAATTGGATCTTTCATTGAATGGTTTTGTGGGGGTATTTCCCCCATCATTGTTGTCACTTCCTTCCATCAATTACCTTGATGTTTCTTCCAATAAACTCACAGGGATGCTTTTCAAGAATTTTTCATGCAATGATGATCTGCACTTTGTTGATTTATCTTCAAATCTTTTGAAAGGGGAACTTCCCTCTTGTTTAAGACCAAAGACCAGGGTTGTTTTATATGCTGGAAATTGTTTATCAAGTGAGAACCAAGGCCAGCACCCTTCTAACTTCTGCAGGAATGAGGCTATTGCAGTTAACATCACACCCCATCAACAGGAGCATGAGAGTAGAACAACTGGTAAAGCCAAAACAGTGTTTGTGTCAAGTATGGGAGGTGTTTTGGGAGTGCTGATTGTTGCAGTGGTGATTTTGGTCATAAGCCAGGTTCACAGAAAACATGTTGTGAAAACAGCTTCAGGGTTAGCATTGGAGCATGTTATCAGTCAGGTACACAATGAAGATGAAGTGAAAACTCCTAAAAGGTCCATAATGGAGCATATCATTAGAAGAGTTCCTGACAAACAAGCAGTGAAAGCACTTGCAAGATCCATAAAGGAGCATGTCAAGAGCCGTGTGATTAACAAACGTAATGTGAGGACATCTACAAGGTCTATAATAGAGCATGTACCATCAGTTAACACCGCAAAACTACTCACAGATGCAAGGTATATATCACAAACAATGAAGATGGGAGCCAGCCTTCCTGCTTACCGGACCTTCGCCTTGGACGAACTTAAGGAAGCTACAAATAATTTTGATGCATCATGTTTCATAAGTGAAGGGCCATATGGTCAGATATATAAAGGAGAGCTCTCTGATGGAATGCACATTGCTGTTAGAAGCATGAAAATAAGAAAGAGACACAGCCCTCAGACCTATATGCACCATGTTGAATTGATTTCGAAACTCAGACATTTACACTTGGTCAGTGCTCTTGGACATTCTTTTGAGTGCAACCAGGATGATTCAAGCGTCAACACTATATTTCTCATATTTGAGTTTATTCCAAATAGAACTTTAAGAAGCTTCGTCTCTGGATCTTCTGGGGAAAAGCTTTCTTGGACACAAAGAATAGCAGCTGCTATTGGAGTGGTGAAAGGCATTCTATTTTTGCACACTGGGATAGTGCCTGGACTATATTCAAATAATCTGAAGATAACAGATATTCTTCTAGATAGCAATCATAACGTTAAAATAAGCAGCTACAATCTGCCACTCTCTGTTGAAAATAAGAAAATGGTCAGCAATGGAACTTCCCCTGGATTAAAAGGAAATCTCCAAGCAAGGCTAAAAGATGCAGACAAGAATGATGTCTATGATATTGGGGCAATTTTACTAGAAATCATTCTGGGACGACCAATAATGTTCCATAATGAAGTTGGAACACTAAAAGATCTTTTACAGGTAAGCATCAAAACTGATGATATAGCTAGGAGAAGTATTGTTGACCCAGCAGTTCATAAGGAATGTTCTGATGAATCATTAATGACAATGATGGAGATATGTGTAAGATGTCTCTCTAGTGAACCAACTGTTAGGCCTTCTGTGGAAGATGTTCTCTGGAATTTGCAGTTTGCAGCACAAGTTCAAAATACATGGAAAAGAGACTCAAATGATCACAGATACTCACCTGTACCATCGTCCACGGAGATAGATCACAGAGACTCGCCTGTACCATCCTCCAGGGAGATATAA 2562 0.4044 MAKPAPHSHLLLVILFLSIIHLSEQLQYSQSQTLLKLQQLLGYPSALNTFTSTTPNTDYCNIEPTPYLTLVCYEDNLTQLHVVGNNEFTPLPQSFSSDSLFSTLGTLSSLKVLSLVSLGLWGPLPESISQLSSLEILNISSNHFSGAIPFQLSKLKNLQSLVLDDNNLNDEIPQWFGSFQGLAVLSMKKNWFSGSIPSSVNSLVTLRVLDLSNNQLSGELPNLHNLANLQVLHLENNTLGPHFPSLPNKLVSLVLRNNSLRLGVPPNISSFYQLQKLDLSLNGFVGVFPPSLLSLPSINYLDVSSNKLTGMLFKNFSCNDDLHFVDLSSNLLKGELPSCLRPKTRVVLYAGNCLSSENQGQHPSNFCRNEAIAVNITPHQQEHESRTTGKAKTVFVSSMGGVLGVLIVAVVILVISQVHRKHVVKTASGLALEHVISQVHNEDEVKTPKRSIMEHIIRRVPDKQAVKALARSIKEHVKSRVINKRNVRTSTRSIIEHVPSVNTAKLLTDARYISQTMKMGASLPAYRTFALDELKEATNNFDASCFISEGPYGQIYKGELSDGMHIAVRSMKIRKRHSPQTYMHHVELISKLRHLHLVSALGHSFECNQDDSSVNTIFLIFEFIPNRTLRSFVSGSSGEKLSWTQRIAAAIGVVKGILFLHTGIVPGLYSNNLKITDILLDSNHNVKISSYNLPLSVENKKMVSNGTSPGLKGNLQARLKDADKNDVYDIGAILLEIILGRPIMFHNEVGTLKDLLQVSIKTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLSSEPTVRPSVEDVLWNLQFAAQVQNTWKRDSNDHRYSPVPSSTEIDHRDSPVPSSREI* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2593 853 Gene3D Phosphorylase Kinase; domain 1 512 622 - -
Lja3g2593 853 PRINTS Leucine-rich repeat signature 295 308 - -
Lja3g2593 853 PRINTS Leucine-rich repeat signature 206 219 - -
Lja3g2593 853 SUPERFAMILY Protein kinase-like (PK-like) 521 814 IPR011009 -
Lja3g2593 853 Gene3D Ribonuclease Inhibitor 246 376 IPR032675 -
Lja3g2593 853 ProSiteProfiles Leucine-rich repeat profile. 205 227 IPR001611 GO:0005515
Lja3g2593 853 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 484 835 - -
Lja3g2593 853 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 10 416 - -
Lja3g2593 853 SUPERFAMILY RNI-like 73 343 - -
Lja3g2593 853 Pfam Protein tyrosine and serine/threonine kinase 547 809 IPR001245 GO:0004672|GO:0006468
Lja3g2593 853 Gene3D Ribonuclease Inhibitor 152 200 IPR032675 -
Lja3g2593 853 Gene3D Ribonuclease Inhibitor 201 245 IPR032675 -
Lja3g2593 853 Gene3D Ribonuclease Inhibitor 29 151 IPR032675 -
Lja3g2593 853 Gene3D Transferase(Phosphotransferase) domain 1 624 835 - -
Lja3g2593 853 Pfam Leucine rich repeat 157 216 IPR001611 GO:0005515
Lja3g2593 853 ProSiteProfiles Protein kinase domain profile. 541 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2593 853 MobiDBLite consensus disorder prediction 825 853 - -
Lja3g2593 853 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 484 835 - -
Lja3g2593 853 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2593 Lja-Chr3 35143705 35148857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2593 43 840 Miscellaneous Gene Families AT3G03770 50.805 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Lja3g2593 PK_Tyr_Ser-Thr 4e-15 CL0016