Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2592 ATGTTCCAGGTTACAGATCCCTCTATCAAGCTTTTTGGAAGCGATATTCACATCCAAACTCCTATTAACTCAGCACATATTGCAGATTCAAATTCTCCCACTCAGATTCAGCCTCTGCCTCAACCCATCACCATGAACGGAATTGAAAAATCAACTAGTGCTGAAGAGAATATTCCAATGGACGAAGCATGTACCAAAGTAGTTCATAGGACTAATGAACACAGAACTGATACAAGAGATTTTGATCAAGAAAAAGTTCTCAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACGAAGTTTTGCTACTTCAACAATTACAATGTCAACCAACCTCGGCATTTCTGCAAAAACTGCCAGAGATATTGGACAGCTGGGGGAACAATTCGAAACGTTCCTGTAGGAGCCGGTAAGCGCAAAAACAAGCACTCACATTTGCATTATTATCAGGTTGCTGTGACTCCTGATGATGCAGTACATGGCATGCACACAGATCCAAACCCTGCTAGTAGTGATATGCATCTCTTGCCTGTTACTTCAAGACCTTTTAAAGAAGCTCCTCTTAGTGAATCCCTTGAAACTATGTTAAATCTCAAGGGCCACACAAAAATTGAAGTGGATTCTTCTACTGTCAAAGATGATTGTGAGGTCCCTTCTAGCTCTTCTGTGAGATCTGTTGAATCCATGGAGAAAGAATGCTCAGAAAATGGGATCGAGCAAGTTGGTTTAATTCCTTTACATCCACTTCATTATTATCCTGTTCCTCCATGGGCTTATCAATGGAATCCCTGTTGGAATGCAATGGCTTTTAGGCCTAGTAGCATAGCTTCCAGTTACATGAGTTCAGCAACCATGATAGCAATTCCTGGCTTCTCCACACCAACAGTAGAATTACCAGTATCTCCTTCTTCATACTGGGGTTGCATGCCAAGCTGGGCTGAACAAAAGGACGAGTCTTCATTGGTTGGATCTACATTCAGTGGCATTCCATCACCTTCATCTTCAGTTAGCAACAGTACTTGTTCTGGCAATAGGTCCCCAACCTTGGGAAAACATTCTAGAGATGGAAGTACTGCAGCAGAAGACACAGTGAATCAGAATCTTTGGGTACCTAAGACTGTGAGAATTCATGATCCAGAAGAGGCTGCAAAGAGTTCTATATGGACAACTTTGGCAACAAAGTCTAAACTGAACAAACCAATTATGAAAGGAAGTGTTTTCAAATCATTTGAACCTAAGTCAAATGGAAGTTCTCATGTTTTAGAGGATAATCAGATTCTAAGGGCAAACCCTGCTGCTTTCTCCCGTTCTGAATCTTTTCAGGAAAGCTTGTAA 1350 0.4163 MFQVTDPSIKLFGSDIHIQTPINSAHIADSNSPTQIQPLPQPITMNGIEKSTSAEENIPMDEACTKVVHRTNEHRTDTRDFDQEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSHLHYYQVAVTPDDAVHGMHTDPNPASSDMHLLPVTSRPFKEAPLSESLETMLNLKGHTKIEVDSSTVKDDCEVPSSSSVRSVESMEKECSENGIEQVGLIPLHPLHYYPVPPWAYQWNPCWNAMAFRPSSIASSYMSSATMIAIPGFSTPTVELPVSPSSYWGCMPSWAEQKDESSLVGSTFSGIPSPSSSVSNSTCSGNRSPTLGKHSRDGSTAAEDTVNQNLWVPKTVRIHDPEEAAKSSIWTTLATKSKLNKPIMKGSVFKSFEPKSNGSSHVLEDNQILRANPAAFSRSESFQESL* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2592 449 MobiDBLite consensus disorder prediction 328 369 - -
Lja3g2592 449 PANTHER CYCLIC DOF FACTOR 2 64 449 IPR045174 GO:0003700|GO:0006355
Lja3g2592 449 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 64 449 - -
Lja3g2592 449 Pfam Dof domain, zinc finger 91 148 IPR003851 GO:0003677|GO:0006355
Lja3g2592 449 ProSitePatterns Zinc finger Dof-type signature. 96 132 IPR003851 GO:0003677|GO:0006355
Lja3g2592 449 ProSiteProfiles Zinc finger Dof-type profile. 94 148 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2592 Lja-Chr3 35140106 35142894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2592 65 448 C2C2-Dof Transcription Factor Family AT5G39660 39.655 1.98e-65 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g2592 zf-Dof 4.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2592 - - gmx:102666857 510.375