Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2519 ATGCCTGGACCAGACGCTCTCGATTTGGAGTGGCCGGCGAAGCGCGTCAGAGACACCTTCGTCAACTTCTTCAAGGAAAGCAAGAACCATGTGTACTGGCAGTCTAGCCCTGTCGTTCCCTTCAACGACCCCACCCTCCTCTTTGCCAACGCTGGTATGAACCAGTTCAAGCCAATATTTCTGGGAACTGCTGATCCAAACACTGACTTGAGCAAGCTGTCTCGTGCTTGCAATACCCAGAAATGCATACGAGCGGGTGGTAAACACAATGATCTTGACGATATGCTTGGCAATTGGTCGTTTGGGGATTACTTTAAAACAGAAGCCATTGGCTGGGCGTGGGAACTTCTAACCAAAGTTTATAAATTACCATCAGATCGGATTTATGCAACCTATTTTGGTGGTGATGAGAAGGCTGGTCTTGCCCCTGATACCGAGGCTAGAGATATATGGTTACAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGACCTTGTACTGAAATACATTTTGACAGAATCGGTAACCGTGACGCTGCATCATTGGTTAATAATGATGATCCTACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAATCTCTGCCTGCAAAGCATGTTGATACAGGCATGGGTTTTGAACGATTGACCTCTATACTACAGAACAAAATGAGCAATTATGACACCGACGTCTTTTTGCCCATCTTTGATGCTATTCAGCTGGCAACTGGTGCTCGGCCATATTCTGGGAAAGTTGGACCAGATGATGCAGATAAAGTTGACATGGCATACAGAGTTGTTGCCGATCACATCAGAACTCTGTCATTTGCTATTGCTGATGGGTCTCGCCCTGGTAATGAGGGCCGTGAGTATGTTCTGAGGCGTATACTCCGTCGTGCTGTTCGGTATGGACGTGAAGTGCTTGTAAGCGTTGTGGTGAATGTGATGGGCGATGTTTTTACTGAGCTAAAACAACAGGAAGCGCACATTAGGGACATAATTAAAGAGGAGGAGGAAAGTTTTGGCAGAACATTAATTAAGGGGATTGAAAAATTTGAGTCATCTGTTCGACATGTTCAGGGAAAGCTGCTGAGTGGGGAGGAAGCATTTGTCTTGTGGGATACATTTGGGTTCCCGTTAGATCTGACTCAGTTGATGGCTGAAGAAAAGGGATTACTTGTTGATGTGGAAGGTTTTAATAGTGCCATGGAAGCTGCAAGAGAGAGATCAAGAAATGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGATGCTGATGCTACCTCTGCATTGCACAAAAAGGGCATTCTCCCAACAGATGACAGCTTCAAATATGTTTGGTTCAAGGACCATCAGAGTGTGGTAAAAGCAATATATACTGTTTCTGAGTTTGTGGATTCTGTTAATACTGATGGTGACATTGGTGTTATTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGTGTCAACATGCTTCATTTCAAGTTCGTAATGTTCAAGTTTTTGGAGGCTTTGTCCTTCACATTGGTAATGGAACTGGTATCTCTGTTGGTGACAAAGTAGTATGTAAGGTTGACTATGGAAGACGTGCCCTTATTGCCCCAAACCATACCTGCACACACATTTTAAATTTTGCTCTTCGGGAAGTACTAGGTGATCATGTTGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGATATGATTTTTCTCATGGCAAGCCTGTTGATGCTGATAACTTGAGGAGAATCGAGTCAATTGTTAATGAGCAAATAAAAGCTGAATTGGATGTAAATGCAAAGGAGGTTACTCTTGCTGATGCCAAGCGCATCAATGGTTTGCGAGCTGTTTTTGGAGAAGTCTATCCTGATCCGGTTCGAGTTGTATCAGTTGGAGAAAAAGTTGAGGATCTCCTTGCTGACCCCGGGAATGATAAATGGTTATCAATATCATCAGAATTATGTGGCGGTACCCATATTTCAAATACACGTGAGGCTAAAGCCTTTGCACTTTTGTCTGAGGAGGGAATTGCAAAAGGAATCCGCAGAATAACAGCTGTTACAACTGAGCGTGCTTATGATGCAATGAAAACGGCCGACGAATTTGAGCAGGAAGTAGATCATGCAGCTAAATTAGAAGGAAGTTTGCTGGAAGAGAAAGTTTCATATCTGAAAAGCAATGTGGAAACATTATCAATTCCAGCAGCCAAGAAAGCTGACATCAAGACCAAGATAGCCCGGCTTCAGGATCAAGTGAGAAAAGCACAAAAGCAGGTTGCCGAAGAGAACAAGCGTAAAGCTGTAACAATCACAGTTGAGAAGACTGAACTCGCTGCTTCAGACGGGAAAAAATTCTGCATATCTCATGTTGATGTTGGTCTGGATGTAGCTGCAGTTCGTGAGGCCGTTACGAAAGTCATGGACCAGAAGGGGTTATCCGTGATGGTTTTTAGCACTGATAAATCTACCAACAAGGCTGTTATTTGTGCTGGGGTTCCGGAGAAAGGAGATAAAGGTAAGCTAGATGTATCAGAGTGGCTGAGTAATGCTTTGGAGCCACTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCAACAGGACAGGGTACAGATGCTTCACACGTAAATGAGGCTATGGATCTTGCTACAAAATTTGCATCCATGAAATTAACTTAA 2790 0.4362 MPGPDALDLEWPAKRVRDTFVNFFKESKNHVYWQSSPVVPFNDPTLLFANAGMNQFKPIFLGTADPNTDLSKLSRACNTQKCIRAGGKHNDLDDMLGNWSFGDYFKTEAIGWAWELLTKVYKLPSDRIYATYFGGDEKAGLAPDTEARDIWLQFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDADKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLVSVVVNVMGDVFTELKQQEAHIRDIIKEEEESFGRTLIKGIEKFESSVRHVQGKLLSGEEAFVLWDTFGFPLDLTQLMAEEKGLLVDVEGFNSAMEAARERSRNAQTKQAGGAIVMDADATSALHKKGILPTDDSFKYVWFKDHQSVVKAIYTVSEFVDSVNTDGDIGVILESTSFYAEQGGQIFDTGSLECQHASFQVRNVQVFGGFVLHIGNGTGISVGDKVVCKVDYGRRALIAPNHTCTHILNFALREVLGDHVDQKGSIVLPEKLRYDFSHGKPVDADNLRRIESIVNEQIKAELDVNAKEVTLADAKRINGLRAVFGEVYPDPVRVVSVGEKVEDLLADPGNDKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTERAYDAMKTADEFEQEVDHAAKLEGSLLEEKVSYLKSNVETLSIPAAKKADIKTKIARLQDQVRKAQKQVAEENKRKAVTITVEKTELAASDGKKFCISHVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDKSTNKAVICAGVPEKGDKGKLDVSEWLSNALEPLKGRCGKGKGGLATGQGTDASHVNEAMDLATKFASMKLT* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2519 929 Pfam tRNA synthetases class II (A) 16 563 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Lja3g2519 929 CDD AlaRS_core 13 248 - -
Lja3g2519 929 Pfam DHHA1 domain 784 923 IPR003156 GO:0003676
Lja3g2519 929 PANTHER ALANYL-TRNA SYNTHETASE 6 928 - -
Lja3g2519 929 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 663 721 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lja3g2519 929 Coils Coil 775 802 - -
Lja3g2519 929 Gene3D - 816 924 - -
Lja3g2519 929 SUPERFAMILY Class II aaRS and biotin synthetases 13 252 IPR045864 -
Lja3g2519 929 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 11 735 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Lja3g2519 929 Gene3D - 470 561 - -
Lja3g2519 929 SUPERFAMILY Translation proteins 487 561 IPR009000 -
Lja3g2519 929 SUPERFAMILY ThrRS/AlaRS common domain 561 735 IPR018163 GO:0000166
Lja3g2519 929 TIGRFAM alaS: alanine--tRNA ligase 16 906 IPR002318 GO:0000166|GO:0005737
Lja3g2519 929 Hamap Alanine--tRNA ligase [alaS]. 1 928 IPR023033 GO:0004813
Lja3g2519 929 Gene3D Bira Bifunctional Protein; Domain 2 12 249 IPR045864 -
Lja3g2519 929 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 253 442 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Lja3g2519 929 PRINTS Alanyl-tRNA synthetase signature 206 217 IPR002318 GO:0000166|GO:0005737
Lja3g2519 929 PRINTS Alanyl-tRNA synthetase signature 314 327 IPR002318 GO:0000166|GO:0005737
Lja3g2519 929 PRINTS Alanyl-tRNA synthetase signature 290 306 IPR002318 GO:0000166|GO:0005737
Lja3g2519 929 PRINTS Alanyl-tRNA synthetase signature 233 246 IPR002318 GO:0000166|GO:0005737
Lja3g2519 929 SMART tRNA_SAD_4 663 722 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lja3g2519 929 Gene3D - 562 738 - -
Lja3g2519 929 PANTHER BNACNNG61840D PROTEIN 6 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2519 Lja-Chr3 32249063 32262093 Dispersed