Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2513 ATGGCATCCTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCCGCAAGTGCCAACCAGAGTGCGCATTTGCACCTTACTTCCCACCTGATCAGCCTCAAAAATTCGCAAATGTTCACAGAATCTTCGGCGCGAGCAACGTCACCAAGCTTCTCAACGACTTGCATCCTCACCAGCGTGAGGACGCGGTGAATTCGCTTGCTTATGAAGCGGAGATGAGGCTCCGTGACCCTGTCTATGGCTGCGTGGGAGTCATTTCTCTCCTTCAACACCAGCTTCGCCAGCTCCAGATGGACCTCTATTGCGCCAAATCCGAGCTCTCCCGGTATCAAAGCTTGAGCCTGACCACCGCCACCACCACCGGTCATGGTCTAATGGCCGGTGGTGAATCTGCGGTCACGGTAGGTTATCATCACCACCATGCGCAGAACGCAGGTGGTGTTGGTGTCGGCCGTGACCATCACTATCATCACCACAACCATCACCAGCTCTTTCCAAGGGAACATAATTACCAGCAGCAGAATATGGTTAGAAGCTTTGATGCAGGGAACAACTATGATGCTAGTCTTCTGGCCATGAACATATCTGCTAGCTTAGGGCAGCTTAACCAGCTTCAACAACAGAGTGCTGCCGGCGGTGGCGGTGACGACCGCCGTGCCTTCAACCGCTCCTAG 675 0.5348 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQSLSLTTATTTGHGLMAGGESAVTVGYHHHHAQNAGGVGVGRDHHYHHHNHHQLFPREHNYQQQNMVRSFDAGNNYDASLLAMNISASLGQLNQLQQQSAAGGGGDDRRAFNRS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2513 224 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lja3g2513 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 186 - -
Lja3g2513 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 186 - -
Lja3g2513 224 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2513 Lja-Chr3 32179929 32180603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2513 2 224 AS2 family AT1G65620 61.435 1.18e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja3g2513 LOB 3.3e-42 No_clan