Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2504 ATGAGTCCTCCAGCTGCAGCTGACATGGAAGATGTCAAGCCTTCTGTTGATAATGCCGACCAAGCTGACTCCCGCTTCGCTGACTTTTGCAAGAATGGGCTGGCTTTGGATGAGAAAAGCTGTAAAGAAGCAATGAATCTGTTTGGAAAAACCAAGCATATTCTACTGACAAATGTTTCATCAATGGGGAATGGAACGTCTGAAGATGCAGAGCGGTACTGGTTTGCTTTTATTTTATACTCAGTCAAGAGATTGACTCAGAATAGTGAGGAGAGTGGGCAGGAAGAGGTTGAGAACACTGGGCTGACCTTGTGTCGTATATTGAGAGCAGCGAATCTTAACATTGCAGATTTTTCTAAAGAGCTTTCTCAGTTTGTTGTCAAGGCTGGTCAAATTTTAAGTAATCTATATGGCACGGATTGGGAAAATTGGCTTAAGGCAAAGGAGATGCATGCCAATGCTACTCAGTTGGAGATCCTTAGCAAGTACTATAAACGTATATTTGGAGAATTTTTTGTTGCACCTGATGCAAATGTCGAAAAGAACTCAATTGTTACTGTTCATGCATCTGATTACCATCGGTTTGGATGGTTACTTTTCTTGGCACTCCGTGCACATGCTTTCAGCCGTTTCATAAACTTGGTGACTTGCACCAATGGTTTAATTTCAATATTGGCTATCTTAATTATTCATGTCCCTGCTCGTTTTCGGAATTTCAACATTAACGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTTGACCTCCTCGCTTCACTTTGCAAAATATATAACACTTCAGAAGATGAGTTGAGGAAGACCATGGAGATAGCCAATAGTTTAATAGCAGATATATTGAAGAAGAAACCTTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATAGCTTGACCTATTTTAAAGATCTGATGGAGGAATTGTCTCTGCCATCTAGTTTAAACATCTTAGAAAAAGACTATGATGTCATGATTCATGACAAGGGTGAACTGGATGAGAGGCTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAACCTTGTCTGGTAGTTCAGTTTCAGCCAGTGGTCTAAAGAGGAAATTTGATTCGATAGCATCGCCTGCTAAGACTGTTATGAGTCCACTCTCACCCCACCGCTCTCCTGCGTCCAGTGCTAATGGCATTCCAGGTAGCACAAATTCAAAGATGGCAGCCGCCACCCCTGTAAGCACCGCAATGACAACTGCAAAGTGGCTTCGGACTGTCATTTCTCCACTTGCACCGAAGCCCTCACAAGAGCTAGAGCGATTCTTGGCATCATGTGACAGGGACATTACTAGTGATGTGGTGCGCAGAACTCTGATTATATTGCAGGCTATTTTTCCTAGTAGTCCTCTTGGGGAACGATGTGTAACTGGAGGCCTGCAAAGTGCAAATCTCATGGACAATATATGGGCCGAACAGCGAAGATTGGAAGCACTAAAGTTATACTATAGGGTATTGGAGGCAATGTGCAGAGCAGAAGCCCAAACACTTCATGCAACTAATTTAACTTCTCTACTTACTAATGAGAGGTTTCATAGGTGTATGCTCGCATGTTCTGCAGAATTGGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGGATTACAGCTTTTGATCTGAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCCCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTGTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCCCTTTCTGCAGAAATCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCACTGGATGAGATTGCAATAAATATTAACTTTTCTTATGGAGGGCTGCCTCCTGTTCCTACCTTGCCTAAATTTGAGACTTCACCAATTCAAAATGGGGATACCAGATCACCAAAGCGTCTCTGTACAGAACATCGAAATGTGTTAGTGGAACGTAATTCTTTCGCTTCACCAGTAAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACCACCTCCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATTATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTGTCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAATGGACATCTCTTTTCTTCAACCGCCATATTGATCAAATCATTTTGTGTTGCTTCTACGGAGTTGCAAAGATTTCACAACTGAGCCTAACCTTTAGGGAGATTATATACAACTACAGAAAGCAACCTCATTGCAAACCCCAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATCGGCACGCCGTAATGGAGCATGTAAACAGAGAATAGGACAGGATCATGTCGACATCATTTCATTTTACAATGAAGTTTTCATTCCATCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACCATGAAAAGTGACCGAAAGCCTGAAGTTAATAAAAATGACGGTACTTGCTTATTAGCTAAACTGAAAGTAATTATATTCATGACTTCTATTGCTATGCTAGTTCCGCACTCCATTATTGGCTTGTATGCTTTTCTCTTTCCAGCTCACTGTCCCGGGTCTCCTAAAATATCACCTTTTCCAAGCCTCCCGGATATGTCCCCCAAAAAAGTGTCTGCCTCACACAATGTTTATGTCTCTCCGTTACGATCGTCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCAATCAATAACCGTTTGAATGGCAACCGCAAGGTCCGAGGTGCCCTCAATTTTGATGATGCGGATGTGGGTTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATCAGCAGAATGGTAGCTCTGGATCATCTTCAGGTGCACCATTGAAGTCTGAACTACTAGACTCTTGA 3171 0.4267 MSPPAAADMEDVKPSVDNADQADSRFADFCKNGLALDEKSCKEAMNLFGKTKHILLTNVSSMGNGTSEDAERYWFAFILYSVKRLTQNSEESGQEEVENTGLTLCRILRAANLNIADFSKELSQFVVKAGQILSNLYGTDWENWLKAKEMHANATQLEILSKYYKRIFGEFFVAPDANVEKNSIVTVHASDYHRFGWLLFLALRAHAFSRFINLVTCTNGLISILAILIIHVPARFRNFNINDSSRFVKKSSKGVDLLASLCKIYNTSEDELRKTMEIANSLIADILKKKPCLASECETENLENFDRDSLTYFKDLMEELSLPSSLNILEKDYDVMIHDKGELDERLFINEDDSLLASGTLSGSSVSASGLKRKFDSIASPAKTVMSPLSPHRSPASSANGIPGSTNSKMAAATPVSTAMTTAKWLRTVISPLAPKPSQELERFLASCDRDITSDVVRRTLIILQAIFPSSPLGERCVTGGLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAININFSYGGLPPVPTLPKFETSPIQNGDTRSPKRLCTEHRNVLVERNSFASPVKDRLLPFSNLKSKLPPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPHCKPQVFRSVFVDWSSARRNGACKQRIGQDHVDIISFYNEVFIPSVKPLLVELGPGGATMKSDRKPEVNKNDGTCLLAKLKVIIFMTSIAMLVPHSIIGLYAFLFPAHCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGALNFDDADVGLVSDSMVANSLYQQNGSSGSSSGAPLKSELLDS* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2504 1056 PANTHER BNACNNG22930D PROTEIN 931 1042 - -
Lja3g2504 1056 MobiDBLite consensus disorder prediction 1036 1056 - -
Lja3g2504 1056 SMART DUF3452_2 85 231 IPR024599 -
Lja3g2504 1056 SUPERFAMILY Cyclin-like 738 878 IPR036915 -
Lja3g2504 1056 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 12 911 IPR028309 GO:0006357|GO:0051726
Lja3g2504 1056 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 931 1042 IPR028309 GO:0006357|GO:0051726
Lja3g2504 1056 SUPERFAMILY Cyclin-like 422 617 IPR036915 -
Lja3g2504 1056 MobiDBLite consensus disorder prediction 390 409 - -
Lja3g2504 1056 Pfam Retinoblastoma-associated protein A domain 414 615 IPR002720 GO:0005634|GO:0051726
Lja3g2504 1056 Gene3D - 417 605 - -
Lja3g2504 1056 PANTHER BNACNNG22930D PROTEIN 12 911 - -
Lja3g2504 1056 MobiDBLite consensus disorder prediction 1036 1050 - -
Lja3g2504 1056 MobiDBLite consensus disorder prediction 385 409 - -
Lja3g2504 1056 Pfam Retinoblastoma-associated protein B domain 740 871 IPR002719 GO:0005634|GO:0051726
Lja3g2504 1056 Gene3D - 703 894 - -
Lja3g2504 1056 Gene3D - 192 350 - -
Lja3g2504 1056 SMART RB_A_2 414 615 IPR002720 GO:0005634|GO:0051726
Lja3g2504 1056 MobiDBLite consensus disorder prediction 709 732 - -
Lja3g2504 1056 Pfam Domain of unknown function (DUF3452) 95 231 IPR024599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2504 Lja-Chr3 31901397 31908734 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Lja3g2504 RB_A 2.1e-64 CL0065