Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2502 ATGGTTGTAAAACCAGGTTCGGTTCCAGACTTGGAGCCACTGCGGGAGCTCTTGAAGCCTCACATAGAGTCCTTCGATTACATGGCTGATGCTGGATTGGAAATCATGTTCCGCCATATCAAACCCATCGAAGTTCTCGACTCCGCGACATCCACGAAGCTCAGAGTCTGGTTGGATAACCCGATGGTGTATCCGCCTCAGAAGGAGGGGTTTTCGAGGACCATGAAGTCGGCCTTACTTCCTTTTGAATGCAGACAGGCGAAAATTTCATATACAGGGAAGTTTACAGCTGATGTTTGCTTTCAATATAATGATGGGCCTGTGATAAGAGAAAATTTGAATCTTGGGCAGCTACCCATAATGCTACAGTCAAAACTATGCAACTTGAGTGGTGCTGATCCCCGAAAACTTGTGTCCTACAAGGAAGAAGCATCAGAAATGGGTGGTTACTTCATCTTGAATGGCCTTGAGAGAGTCATTCGACTATTAATTTTGCCAAAAAGGAACTATCCCATGAGTACAGTACGGAATTCATTTAGTCAGCGGCGGGAGGGATATACTGATAAAGCAGTTGTAATAAGGTGTGTAAGAGCTGATCAATCCTCACTAACCGTAAAATTGTATTACCTTCGTAATGACAGTGCAAGACTTGGTTTCTGGGTAAAAGGGAGGGAGTACTTGCTTCCCGTAGGCATTGTTTTGAAGGCCCTCATTGACACCAGTGACCTTGAAATTCGTACAAATTTGAAAAGCTGCTACAATGAGAAGTATGAAAAGGGAAAGGGTGCTGTTGGAACCCAGCGTGTTGACGATAGGGCAAGAATGATAATAGAGGAAGTTCGACAGTTGTCTCTTTTCACTCGCCTTCAATGTCTAAATTATATCGGAGAGCATTTCCAACCTATTCTGACTGAACTTAAAAATGACAGCTATGATACCGTGGCCAAGGCAGTTCTAAAGGACTACGTGTTTGTTCATCTGGATGATAATTTTGACAAGTTCAATCTGCTCATCTTCATGCTGCAGAAACTTTTCTCACTTGTAGATGGTACGTCAGTGTTGGACAACCCTGATTCTTTACAAAATCAGGAGGTTTTACTCCCTGGACATCTGATTACACTTTATCTTAAGGAAAAACTAGAAGATTGGTTGCAAAGTGGAAAAGATGAGATGAAGAGAAAAAGCGGGACGTTTGATTTCAGTGAAATTTTTGTAGTTAAGAAGTGTTTTGATAAAACTCCAGCAAGAGCTATCAGTACATCAATTGAGAATATGTTGAAAACTGGAAGATTGGTTACCAACACAGGTCTGGATCTGCAGCAGAGGGCGGGCTATACAGTTCAGGCTGATAGACTGAACTACTTGCGCTTCCTCTCACATTTTCGTGCTGTTCATCGAGGGGCCTCATTTGCTGGACTCCGTACTACAACTGTGCGGAAGCTGTTGCCTGAATCTTGGGGTTTTCTTTGCCCTGTCCACACACCTGATGGGGAGCCCTGTGGATTGTTGAATCATATGACTTGCACTTGTAGGATTACGTCATATTTTGACTCCCAAGGAAGCATTAAAGATTATTTTAAAATTAAAATATCTATCCTCGATATTTTAGTTGACAGTGGAATGACACAATTAGTGCCAAAGCTACTTCTACCTGGCCCACCTGAAGTTCTTACTGTTCTTTTAGATGGTTGCATTGTTGGTTGTATCCCTTCTGGTGAAGTTGAGAAAATTGTGGCTCACATTCGAGAATTAAAAGTGTCATCTTCTGCAATGATTCCTGATGATCTCGAAGTGGGATATGTTCCTTTGAGCATGGGTGGAGCATATCCTGGTCTCTACCTCTTCACTTCTCCTTCAAGATTTGTTCGGCCAGTGAGAAATATATCAATTCTTTCCAATGAAAACAAAAACATTGAACTCATTGGACCATTTGAACAGGTTTTTATGGAGATACGATGTCCTGATGGTGGAGATGGTGGAAGAAAGAGTTCATTTCCTGCAACTCATGAGGAAATTCATCCAACAGGAATGCTTAGTGTAGTTGCTAATCTTACGCCATGGTCAGATCATAATCAGAGTCCACGAAATATGTATCAGTGTCAGATGGCAAAGCAAACAATGGCATTCTCGTCACAAACAATTCAGCATCGTGCTGATCAAAAGTTATATCATCTTCAGACTCCCCAAACTCCCATCGTTCGCACAAGCACATATACCAAATACAACATTGATGAATATCCAACAGGCACAAATGCTATAGTTGCAGTTCTGGCATATACAGGATATGATATGGAGGATGCCATGATTCTAAATAAGTCATCAGTAGAACGTGGAATGTTTCACGGACAAATTTATCAGACTGAAACTGTTGACTTGACTGAACAAGGCAGCAGGTCTGACCCATCTTCAAGAATGTTCAGAAAAAGTAACATAGAGAAGTCCAAGCTTGATTCAGATGGACTTCCACATGTTGGTCAGATGATACGGCCAGATGAACCCTACTGTAGCATTTATAATGCTTCAACGAGTTCCACGCACACCTTAAAAAAAAAGGGTTCTGAACCTGTTTATGTTGACTATGTTGCTGTTGATGTAAAAAACAAGAAGGACCTTCAAAAGGTTAATATTCGTTTTCGACATCCGCGGAACCCGGTGATTGGTGATAAATTTAGTAGTAGGCATGGACAGAAAGGTGTTTGCTCTCAGTTGTGGCCAGATGTTGATATGCCATTTTGTGGAACTACTGGGATGCGCCCAGATCTCATTATCAATCCTCATGCATTTCCTTCTCGGATGACAATTGCCATGCTTCTGGAATCTGTTGCTGCTAAGGGAGGTAGCCTACATGGAGAATTTGTAAATGCAACTCCATTTCGTGGTTCAGTGAAGAAAGATAATGGGGAATCTGAAAAGTCAGGTTTGCTCCTTGATGATCTTGGTCAAATGCTAAGAGAAAAGGGATTTAACTATCATGGTTTAGAGGTTCTGTACAGTGGGGTTTACGGGAAAGAATTAACATGCGAGATATTCATTGGACCTGTTTATTATCAGCGGCTACGCCACATGGTTTCAGACAAATTTCAGGTTCGATCTACCGGCACAGTTGACCAGGTTACACGGCAGCCAATAAAAGGACGAAAGCGTGGTGGTGGGATCCGATTTGGTGAAATGGAACGCGACTCTCTACTCGCACATGGTGCTGCATATCTTCTTCATGATAGGCTGCACACTTGTTCTGATTATCACATTGCTGATGTATGTTCCCTTTGTGGAAGCATGCTTGCAACATCATTTATCCAGCCTCAGAAGCTTCCGAGGCGCGAGATTGGTGGGCTGCCCCCAAGAAAAGCTCCGAAAAAGGTCATCTGTCATGCTTGCCAAACCAGTAAAGGCATGGAGACAGTTGCCATGCCCTATGTGTTTAGATATTTGGCAGCTGAGTTTGCAGCAATGAACATTAAAATGACTCTTAAACTAAATAATGGAGCTAGCGCCTGA 3498 0.4237 MVVKPGSVPDLEPLRELLKPHIESFDYMADAGLEIMFRHIKPIEVLDSATSTKLRVWLDNPMVYPPQKEGFSRTMKSALLPFECRQAKISYTGKFTADVCFQYNDGPVIRENLNLGQLPIMLQSKLCNLSGADPRKLVSYKEEASEMGGYFILNGLERVIRLLILPKRNYPMSTVRNSFSQRREGYTDKAVVIRCVRADQSSLTVKLYYLRNDSARLGFWVKGREYLLPVGIVLKALIDTSDLEIRTNLKSCYNEKYEKGKGAVGTQRVDDRARMIIEEVRQLSLFTRLQCLNYIGEHFQPILTELKNDSYDTVAKAVLKDYVFVHLDDNFDKFNLLIFMLQKLFSLVDGTSVLDNPDSLQNQEVLLPGHLITLYLKEKLEDWLQSGKDEMKRKSGTFDFSEIFVVKKCFDKTPARAISTSIENMLKTGRLVTNTGLDLQQRAGYTVQADRLNYLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTCRITSYFDSQGSIKDYFKIKISILDILVDSGMTQLVPKLLLPGPPEVLTVLLDGCIVGCIPSGEVEKIVAHIRELKVSSSAMIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFVRPVRNISILSNENKNIELIGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETVDLTEQGSRSDPSSRMFRKSNIEKSKLDSDGLPHVGQMIRPDEPYCSIYNASTSSTHTLKKKGSEPVYVDYVAVDVKNKKDLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFCGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGEFVNATPFRGSVKKDNGESEKSGLLLDDLGQMLREKGFNYHGLEVLYSGVYGKELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLATSFIQPQKLPRREIGGLPPRKAPKKVICHACQTSKGMETVAMPYVFRYLAAEFAAMNIKMTLKLNNGASA* 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2502 1165 MobiDBLite consensus disorder prediction 792 823 - -
Lja3g2502 1165 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 12 1157 - -
Lja3g2502 1165 ProSitePatterns RNA polymerases beta chain signature. 887 899 IPR007121 GO:0003677|GO:0003899|GO:0006351
Lja3g2502 1165 MobiDBLite consensus disorder prediction 805 819 - -
Lja3g2502 1165 Pfam RNA polymerase I, Rpa2 specific domain 566 623 IPR009674 GO:0003899|GO:0005634|GO:0006351
Lja3g2502 1165 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 12 1157 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lja3g2502 1165 Gene3D RNA polymerase Rpb2, domain 2 170 353 IPR037034 GO:0003677|GO:0003899|GO:0006351
Lja3g2502 1165 Pfam RNA polymerase Rpb2, domain 2 187 365 IPR007642 GO:0003677|GO:0003899|GO:0006351
Lja3g2502 1165 Pfam RNA polymerase Rpb2, domain 6 681 1048 IPR007120 GO:0003677|GO:0003899|GO:0006351
Lja3g2502 1165 CDD RNA_pol_B_RPB2 17 1158 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lja3g2502 1165 Pfam RNA polymerase Rpb2, domain 7 1050 1158 IPR007641 GO:0003677|GO:0003899|GO:0006351
Lja3g2502 1165 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 9 1161 - -
Lja3g2502 1165 Gene3D RNA polymerase alpha subunit dimerisation domain 1035 1161 - -
Lja3g2502 1165 Pfam RNA polymerase beta subunit 16 396 IPR007644 GO:0003677|GO:0003899|GO:0006351
Lja3g2502 1165 Gene3D - 10 169 - -
Lja3g2502 1165 Gene3D - 354 546 - -
Lja3g2502 1165 Pfam RNA polymerase Rpb2, domain 3 449 512 IPR007645 GO:0003677|GO:0003899|GO:0006351
Lja3g2502 1165 Gene3D - 682 1033 IPR037033 GO:0003677|GO:0003899|GO:0006351
Lja3g2502 1165 Gene3D - 712 883 IPR014724 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2502 Lja-Chr3 31827863 31853914 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2502 3 31827863 31853914 Lja3g2502 3 31827863 31853914 ECH