Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2497 ATGAGGAAGAGTACAAGGGTTGGTGTTGAAAATGACAAAGGAGCAGAAAGAGGGATGCCAAGCTTCAATTCTGAGCTACCCTTTTCCAACACATGCGATTCAGAGTGGAGAACAGTTGATTCTTTTCATGTTTCTGACTTTGGAGCATTTGATCAATCATATCGCTTAGAGGATGCTGTTGATCTAGGTGGAAATTCAGTTTTTGACTCGCTAAAACTAAGTGGCCAAACTACTTTTCCGGGTTCTGTTTACATCGGTAATCTTCATAAGTTACCAACTTCAGTTGATAAAAGCTCACTGACGAACCAAACAGAGCAGTGTAGACTGCAATTACAAAAGGTTCAATCATCAAATCCTGGAACCATATTAGTTGGTGATACAGAAATTCTTGAAGAGCCTACCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACTGATGACAGGAATCAACGGTTTGATAGGAGTGCCCTTGCTGCTGTGGCTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAGAAGACTCTTCGCAGGCTTGCTCAGAATCGTGAGGCGGCCAGAAAAAGCCGGTTGAGAAAGAAAGCCTATGTCCAACAACTGGAAAGTAGTCGTTTGAAGCTGACCCAGCTAGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGGGTCTTCATATCAAGCTCAGGCGATCAGGCACATACAATGGGTGGAAATGGGGCTATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTCAGAGCAGCTGTAAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGGCTGAAAGGTGTTGCAGCAAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACGCCTGCTGAGAGGTGCTTTTTGTGGCTGGGTGGTTTTCGGCCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTCACAGAGCAGCAACTGATGGGTATTACCAACTTGCAGCAGTCCTCTCAACAAGGAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTGCGGAGACATTGTCCACTGGAACCCCTGCCTCATCTGGTTCCTCTGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTCGACGGGTTTATTCGACAGGCTGACAATCTGCGCCAGCAAACTCTCCAGCAAATGCACCGGATACTGACAACTCGGCAATCAGCCCGCGCCCTCCTTGCTATAACTGACTACTTTTCGCGGCTGCGTGCTCTCAGTTCGCTCTGGCTGGCCCGCCCAAGAGATTAA 1398 0.4642 MRKSTRVGVENDKGAERGMPSFNSELPFSNTCDSEWRTVDSFHVSDFGAFDQSYRLEDAVDLGGNSVFDSLKLSGQTTFPGSVYIGNLHKLPTSVDKSSLTNQTEQCRLQLQKVQSSNPGTILVGDTEILEEPTMADASPRTDISTDVDTDDRNQRFDRSALAAVASDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHTMGGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRPSELLKLLVNQLEPLTEQQLMGITNLQQSSQQGEDALSQGMEALQQSLAETLSTGTPASSGSSGNVANYMGQMAMAMGKLGTLDGFIRQADNLRQQTLQQMHRILTTRQSARALLAITDYFSRLRALSSLWLARPRD* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2497 465 PANTHER TRANSCRIPTION FACTOR TGA9 63 465 - -
Lja3g2497 465 Gene3D - 179 228 - -
Lja3g2497 465 MobiDBLite consensus disorder prediction 129 156 - -
Lja3g2497 465 Pfam Basic region leucine zipper 176 222 IPR004827 GO:0003700|GO:0006355
Lja3g2497 465 Pfam Seed dormancy control 262 337 IPR025422 GO:0006351|GO:0043565
Lja3g2497 465 Coils Coil 256 276 - -
Lja3g2497 465 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700|GO:0006355
Lja3g2497 465 MobiDBLite consensus disorder prediction 163 182 - -
Lja3g2497 465 Coils Coil 199 226 - -
Lja3g2497 465 CDD bZIP_HBP1b-like 180 232 - -
Lja3g2497 465 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g2497 465 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 222 IPR004827 GO:0003700|GO:0006355
Lja3g2497 465 SUPERFAMILY Leucine zipper domain 180 223 IPR046347 GO:0003700|GO:0006355
Lja3g2497 465 ProSiteProfiles DOG1 domain profile. 245 462 IPR025422 GO:0006351|GO:0043565
Lja3g2497 465 SMART brlzneu 176 239 IPR004827 GO:0003700|GO:0006355
Lja3g2497 465 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 63 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2497 Lja-Chr3 31712255 31721100 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g2497 DOG1 4.2e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2497 3 31712255 31721100 Lja3g2497 3 31712255 31721100 ECH