Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2477 ATGGAGGATAATCCAACTTCAAGTGTTTTAGATGCGGAAGTAGTTGGGATTCGATTTGGTATGGCTACACGCCAGGAAATTTGTACAGCATCGATAAGTGACTCCTCAATTAGTCATGCTAGTCAGCTGTCAAATCCATTCCTTGGGCTGCCCCTTGAATATGGAAGATGTGAATCTTGTGGTACTTCTGAAGCAGGAAAATGTGAAGGCCACTTTGGATATATTGAGCTTCCAATTCCAATATATCATCCTAACCATGTTAGTGAATTGAAGCGGGTACTGAGCCTGATTTGCTTAAACTGCTTAAAAATGAAGAAAACCAAGTTTCCTTCTTCAAGCAGTGGTTTGGCACAGAGGTTATTATCTCCCTGCTGTCAGGATGCTAATGCTGCACAAGTTTCTATACGGGAAGTCAAAACAGCCGATGGAGCTGGTTACTTAGTACTGAAAGTATCTAAGTCAAAGATGCATGATGGTTTTTGGAGGTTTCTAGACAAGTATGGCTATCGTTATGAGGGCGATCATACTCGAGCTTTGCTTCCTTGTGAGGTGATGGAAATTATCAAGAGATTTCCCCTAGAAACCAAGAAAAAACTGGCTGGGAAAGGATATTTTCCTCAAGATGGATATGTGTTGAAGTATCTTCCTGTACCACCAAATTGCTTGTCTGTGCCTGTTGTTTCTGATGGCGTCAGTGTCATGTCTTCGGATCCTTCCATGACATTTCTGAGAAAATTGCTCAGGAAGGTTGAAATCATCAGAAGTTCTAGATCTGGTGAACCAAACTTTGAGTCTCATGAAGTGGAAGCAAATGACTTACAGTCAGTGGTTGACCAGTATCTTCAAATTAGGGGCTGTGCTAAACCTGCCCGTGATATAGAAACACACTTCGGGGTCAATAAAGAGCTGAGTGATGCATCAAACAAAGCATGGCTTGATAAAATGAAAAGTCTATTTATAAGTAAGGGTTCAGGTTTTTCTTCAAGGAGTGTGATAACTGGAGATGGGTACAAGAGGATAAATGAAGTAGGAATTCCGCTTGAAATTGCCCAGAGGATAACATTTGAAGAGAGAGTAAACTTGCATAACATGTGTTTTTTACAGAAGTTGGTTGATGAAAATTTGTGTCTCGCCTACAAGGAAGGTGTGTCAACATATTCACTGAGGGAGGGCTCAAAGGGGCACACATATCTTAAGCCTGGCCAGATAGTGCATAGAAGGATTATGGATGGGGACATCGTCTTCATTAACAGACCACCTACAACCCACAAACACTCATTACAAGCACTTGTGGTCTACATCCACGATGATCACACGGTGAAGATAAATCCACTGATTTGTGGGCCTCTTGGAGCTGATTTTGATGGGGATTGTGTCCATTTATTTTATCCACAGTCACTTGCTGCTAAGGCTGAAGTAGTGGAATTATTCTCGGTGGAGAAACAGCTCCTCAGCTCTCACAGTGGTAATCTGAACCTGCAATTATCCACAGATTCCTTATTGTCACTGAAGATGTTAGTGAAGAAAGGTTTTATGGATAGAGCAGCTGCTAATCAATTGGCAATGTTTCTTTCCTTGCCTTTGCCACGACCTGCTTTGCTGAAGGCCGGTTCTGGTGATTCTTATTGGACATCCATCCAAATTTTGCAGTGTGCTTTGCCTTTATCTTTTGATTGTACTGGGGGACGTTACTTGATTAGGCAGAGTGATATCTTAGAATTTGATTTGAGTAGGGATGTTCTTCCTGCAGTTATAAACGAAATAGCAGCGTCAGTGTTCTTTGGGAAGGGTCCTCAAGAGGCACTGAATTTCTTTGATGTGTTACAACCGGTTTTGATGGAAAGCATATTCAGTAATGGATTTAGCGTTGGCTTACATGATTTTTCAATATCTGGGGCCGTGAAAAGGGTTACAGACAGAAACATAGGGAAAGTTTCCCCGCTGTTGTATCAGTTGAGGTTTATATATAATGAGTTGGTGGCACAGCAATTAGAGAAGCACATGCAAGACATTGAACTTCCTGCTATAAAATTTGTTTCAAAATCATCCCGACTTGGGGATATGATTGATTCCAAAAGTAAATCAGCTCTTGATAAGGTGACACAACAGATAGGGTTCCTTGGGCAGCAACTCTTTGTGCGAGGGCGACTGTATTCCAAGGGGTTGTTGGAGGATGTTGCGTTACATTTTAAATTAAAATGTTACTATGATGGAGATGGTTATCCCTCAGCTGAATATGGATTACTCAAAGGTTGTTTTTTCCATGGTTTGGACCCATTTGAAGAGTTAGTACATTCAATTTCCACAAGAGAGATAATGGTTCGCTCTTCAAGAGGATTGTCTGAACCTGGAACTTTATTTAAAAACTTGATGGCCATCCTTCGGGATGTTGTAGTTTGTTATGATGGAACTGTGCGAAATGTATGTAGTAATTCCATCATTCAGTTTGAGTATGGGGTAAAAGCTGGAGACAAAACTCGGTACTTATTCCCTGCTGGTGAGCCTGTAGGTGTCTTGGCAGCAACATCAATGTCTAATCCTGCTTATAAGGCAGTCCTTGATGCTAGTCCTAGCAGCAGTTGTTCATGGGAATTGATGAAGGAAATACTTCTCTGCAAAGTCAATTTTCGAAATGAACCAATTGACCGCCGAGTAATTTTGTACTTGAATGACTGCGATTGTGGAAGGAGGTATTGCCGAGAAAATGCAGCATATATAGTTAAAAATCAATTGAGAAAAGTCAGCCTGAAGGACACAGCTGTGGATTTCATTGTTGAATACCAACAGCAGCGGAAACGGGAAGGTTCTGAAACTGATGCAGGCCTTGTTGGTCATATTCATCTCGATGAGGTGATGTTGGAGGAGCTGAAGATCAATATGGCTGAAGTTTTCCAAAGATGCCAGGAAAAACTTCGTTCGTTAAATCGGAAAAGGAAATATTATCAAACTTTGAAGAGCACTGAATTGTTTTTCAGTGAGTCTTGTGCTTCTCCCAATTTTTCTTCACCATGTGTGACATTCATTTCGCTAGATGGTGATGGTTTAGACAAAACCACTGAAATCCTGGCTGACGTAATCTGCCCGGTTCTGTTAGGTACAATAATCCAAGGAGACCCCCGAATTAGCTCTGCGAATATAACCTGGATTAATCCTGACTCAAACGCATGGGTGCGCAACCCATCAAAGTCTTCTAATGGTGAATTGGCACTAGACATCATTCTTGAGGAGGCAGCTGTTAAACAAAGTGGTGATGCTTGGAGGATAGTGCTTGATTCCTGCCTTCCTGTCCTTAACTTGATTGATACCAGGCGTTCTATCCCTTATGCTATTAAGCAGGTTCAGGAATTACTTGGGATATCATGTACTTTTGATCAAGCAATCCAGCGTCTTGCAGCATCTGTGAAAATGGTAGCAAAAGGTGTTCTTAGAGAACATCTCATTCTGTTAGCAAGCAGCATGACTTGTGGCGGGAATTTGGTGGGCTTTAATACAGGTGGATATAAAGCACTGGCTCGTCAATTAAATATTCAAGTACCATTCACTGATGCAACTCTCTTTACTCCTAAGAAATGTTTTGAGCGAGCTGCTGAGAAATGCCACACTGACTCTTTATCAAGCATCGTTGCCTCCTGTTCGTGGGGTAAACCTGTGGCAGTTGGAACAGGATCAAGATTTGATGTTTTATGGGATGCGAAAGAGAGAAAGTCAAATGAACTTGAAGGGATGGATGTTTACAATTTTCTTCACATGGTGAAAAGCCTTATCAATGGGGAAGAAGAAAACGATGCTTGCTTGGGTGAGGACATTGATGATTTGCTAGAAGAGGAGAATGCTGATTACGGCTTGTCTCCACAGCATACCTCCGGACTTGATGCTGTGTTTGAAGAGACTTTTGAAGCAATGAACGGTCCAGAATCCAATGGTTGGGGTGCAACTACAGATCGGACTGAAACAAAGTCAACACAGTGGTCAGCCTGGGAAAGTAATAAAGCAGAAACAAAAGATGGTGGTTCTCAAAGAGTCCATGAGGATTCTTGGACTTCTCGTGATGTGATGAAAGATGATTCCCAGATGACCAACGCTTGGGATGGAAACGTGGAACAGACCAAAACAATTTCAAATGATTGGACTGCTTGGGGGAAAAATAAATCGGAAATACAGGATAATGTGGCTGAAAAGGCCGAAGGGGAGTGTGGGAGCTCTGAAAAGTGGAAAACTGCTGTTATCCAAGAAGGCTCTTCCAAGTCCAATGCTTGGAAGTCAAACATAGAGCAACGTAGTGATGAGGATTCTTGGACCTCTCAGAAACTGAAAGCTGATGTTATCCAGGACTCTTCCAAGCCAAGCTCTTGGGGAGCTAAACCCAAGTCGAATGACTCCTCCAATTGGGGAAGAAATAAAGATGAAATACAGGATGTTGTGTCTAGAAGAGCCGAAGATGATTCTTGGAGCTCTAAGAAACAGCTTAGTTCTGATGCTACCCAAGAAGACTCTTCCAAGTTCAGCTTTTGGGGAGGTAACAAAGATACAACAAAGCCAAAGTCAAATGATTGGTCCAGTTGGGGTGGAAATAGAGATGGAATACAAGATGGTGGGTCTAAAAGAGCCCAAGATGATTCTTGGAGCTCTCAAAAAGATGTTACCAGAGAAAGCTCTTCTAAGGTTGATGCATGGGGTGCAAATAATGAGGCATCAAACCCCAAGTCAAATGATTGGTCAGCCTGGGGGAAAAATAAAGATGGAACTCAAGATGGTGGTTCAGAGAGAGCCCAAGAGGATTCATTAAGCTTTGGTAAGTGGAAAGCTGAATCACAAGTTGAAGCTGATACGGTGCAAGAAGACTCTTCTAAATCCAAAGCCTGGGAACGTACTTCTGACAATGTGAAGGTTGACAATAGCTCTTGGGGAAAACCCAAATTTCCAGAAACTCAAGCTTGGGATCCCCAGAAAGAGACAAATCAAGGTGCAGGTTCACGTGGGTGGGACTCACAAATTGCTTCTGCTAATTCTGACAGTGATAGAAATTTTCAATGGGGAAAGCAAGGAAGAGAATCATTTAAGAAAAGTCGCTTTGAAGGTTCACAAGGTTGGGGATCAAATGCTGGTGATATGAAACATATGAATCGTCCTGGCAGAGTACCTGGACCAAGGTTGGATATGTATTCATCTGAGGAACAGGATATTCTCAAGGATATTGAACCTATTGTCCAGTCCATCAGACGAATAATGCAACAAGAAGGGTATAATGATGGGGATCCGCTGGGTGCTGATGACCAACAGTTTATACTGGAGAATGTCTTTGAACACCACCCAGATAAAGAAACCAAAATGGGTGCTGGAGTTGATTACGTCATGGTAAGCAGACACACCAGTTTTCAGGTAAGCAGGTGTCTTTATGTGGTTTTAAAGGATGGGCGAAGCGAAGACTTCTCATATAGAAAGTGTCTGGAAAACTTGGTAAAGAAAAAATATCCAGACCTTGCTGAGTCATTCAATGGCAAATATTTCCGGAAACCCCGTCCAAGGCAGAACCAGACCCCAACTTCAGCAGGGGATCAGACCCCAACTCCTGCGGGGGATCAACCACAAACTACTGCGCCTGTAGAAGAATCCAAAGAGTAG 5622 0.423 MEDNPTSSVLDAEVVGIRFGMATRQEICTASISDSSISHASQLSNPFLGLPLEYGRCESCGTSEAGKCEGHFGYIELPIPIYHPNHVSELKRVLSLICLNCLKMKKTKFPSSSSGLAQRLLSPCCQDANAAQVSIREVKTADGAGYLVLKVSKSKMHDGFWRFLDKYGYRYEGDHTRALLPCEVMEIIKRFPLETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSVMSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPALLKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVALHFKLKCYYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAVLDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDEVMLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTFISLDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLHMVKSLINGEEENDACLGEDIDDLLEEENADYGLSPQHTSGLDAVFEETFEAMNGPESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNVEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNAWKSNIEQRSDEDSWTSQKLKADVIQDSSKPSSWGAKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWGKNKDGTQDGGSERAQEDSLSFGKWKAESQVEADTVQEDSSKSKAWERTSDNVKVDNSSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQWGKQGRESFKKSRFEGSQGWGSNAGDMKHMNRPGRVPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQQEGYNDGDPLGADDQQFILENVFEHHPDKETKMGAGVDYVMVSRHTSFQVSRCLYVVLKDGRSEDFSYRKCLENLVKKKYPDLAESFNGKYFRKPRPRQNQTPTSAGDQTPTPAGDQPQTTAPVEESKE* 1874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2477 1873 Pfam RNA polymerase Rpb1, domain 5 756 1169 IPR007081 GO:0003677|GO:0003899|GO:0006351
Lja3g2477 1873 PANTHER DNA-DIRECTED RNA POLYMERASE 196 1380 IPR045867 GO:0003899|GO:0006351
Lja3g2477 1873 Gene3D - 1729 1822 - -
Lja3g2477 1873 Gene3D RNA polymerase ii 354 406 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1352 1366 - -
Lja3g2477 1873 Gene3D RNA polymerase Rpb1, domain 3 487 622 IPR042102 -
Lja3g2477 1873 Pfam Protein of unknown function (DUF3223) 1747 1816 - -
Lja3g2477 1873 Pfam RNA polymerase Rpb1, domain 3 482 627 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lja3g2477 1873 Pfam RNA polymerase Rpb1, domain 1 41 281 IPR007080 GO:0003677|GO:0003899|GO:0006351
Lja3g2477 1873 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 8 1231 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1412 1717 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1333 1351 - -
Lja3g2477 1873 Pfam RNA polymerase Rpb1, domain 2 325 478 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1436 1460 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1831 1873 - -
Lja3g2477 1873 Gene3D RNA polymerase II, clamp domain 4 121 IPR044893 -
Lja3g2477 1873 SMART rpolaneu7 208 507 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1606 1626 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1646 1676 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1554 1577 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1302 1366 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1839 1866 - -
Lja3g2477 1873 Gene3D - 796 827 - -
Lja3g2477 1873 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 196 1380 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1487 1523 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1306 1332 - -
Lja3g2477 1873 Gene3D - 320 486 - -
Lja3g2477 1873 MobiDBLite consensus disorder prediction 1461 1486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2477 Lja-Chr3 31122642 31147532 Dispersed/Tandem