Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2472 ATGGGAATGGCTACACCTAAAGAGACCCAGTTTCATGTTTTAGCTGTTGATGACAGTCTTATTGATAGAATGTTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGTTACTGCAGTGGACTCTGCCAGTAAGGCTTTAAATTTTCTTGGTTTGGTTGAAGATATGGCTTCAGAAATTCATCAGGATGTGGATGTAAACCTGATCATAACAGATTATTGCATGCCAGGGATGACTGGCTATGATCTGCTGAGAAAAATCAAGGAATCAAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCAGAGAATGTTCCATCAAGGATCAACAGGTGCCTAGAAGAGGGAGCTGAAGAATTCTTCCTAAAACCAGTTCAGCTATCTGATGTACACAAGCTCAAGCCCCATTTGATGAAATCAAGAGTTAAGGAAGAGCAAGACCAACAACCCATCAATAACAAAAGGAAGATCAAGGAAGAGTTCCACTCTCCAGATAAAACTAGAGTAAAATGTATTAGTTAA 525 0.3943 MGMATPKETQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSASKALNFLGLVEDMASEIHQDVDVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVHKLKPHLMKSRVKEEQDQQPINNKRKIKEEFHSPDKTRVKCIS* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2472 174 Pfam Response regulator receiver domain 13 133 IPR001789 GO:0000160
Lja3g2472 174 ProSiteProfiles Response regulatory domain profile. 12 139 IPR001789 GO:0000160
Lja3g2472 174 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 171 IPR045279 GO:0009736
Lja3g2472 174 SUPERFAMILY CheY-like 10 145 IPR011006 -
Lja3g2472 174 Gene3D - 12 171 - -
Lja3g2472 174 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 8 171 - -
Lja3g2472 174 SMART REC_2 11 135 IPR001789 GO:0000160
Lja3g2472 174 MobiDBLite consensus disorder prediction 140 174 - -
Lja3g2472 174 CDD REC_typeA_ARR 13 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2472 Lja-Chr3 30979705 30981774 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja3g2472 Response_reg 1.3e-20 CL0304