Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g2468 | ATGTCGTCACTGCATCCTCTCGAAAACCCTTCGAGCACCGGTCCCAGAACGCCGCTGGGGGAAAGCACGGAACACCGTCCAGAAGGCTCGGGTCTCGCAGCAGAAGAAGAAGGGAACGGAGGATTGAAACGACTCCCTCCTCCAATGGCTCGATCTGGATGGTCTGTGTCATCTCCACCATCCTCCGCGCCGACTTCGAAGCCCAAGCCACCAGTAAAATGCATAACACAGAGGGTGTCACACTTATTCTCCAGAAATATAAATCAAAACACCTATGGAATTTCTGAGAGAAGCTCCGAATGGAAAAGTCTTTTATACAGGTTTTCGGAAAGCAAAAATTTTCGAGCTTATAGTCGAAAGTTCTGTAGTGGAACACAGGTGATGACCCGGGTAAAACAAAATAGATCTCCAGTAAACTTGTTTTATAATTCGGATATATTTAAAACTTGGACTCCAACAGGCCGGCGTCTTATTACTGGCTCACAGACTGGTGAATTCACTCTTTGGAATGGACAGTCTTTTAATTTTGAAATGATCCTTCAGGCTCATGATCAAGCAATCAGATCCATGGTCTGGAGTCACAATGACAACTGGATGGTCTCCGGTGATGATGGCGGTGCAATAAAGTATTGGCAGAACAACATGAATAATGTCAAAGCTAACAAATCTGCTCATAAAGAATCTGTCCGTGACTTAAGTTTCTGTAGGACAGATTTGAAGTTCTGTTCGTGCTCTGATGATACCACTGTTAAAGTTTGGGACTTTGCACGCTGTCAAGAAGAGTCTTCATTAACTGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCATCCTTCAAAATCTCTATTAGTATCAGGTGGGAAGGACAATCTTGTGAAACTTTGGGATGCCAAATCAGGGAGGGAGCTTTGCTCATTTCATGGCCACAAAAATACTGTGCTTTGTGTTAAATGGAATCAAAACGGCAACTGGGTGTTAACAGCTTCAAAAGATCAAATAGTAAAGCTTTATGACATAAGAGCAATGAAGGAGCTTGAATCATTTCGTGGACACCGGAAGGATGTTACTGCTTTGGCTTGGCATCCATTCCATGAAGAGTACTTTGTTAGTGGAAGCTATGATGGTTCCATCTTCCATTGGCTTGTTGGGCATGAAACTCCACAAATTGAAATTTCCAATGCTCATGATAATAATGTGTGGGATCTTGCATGGCATCCGATTGGATACCTTTTGTGCAGTGGTAGCAGTGATCATACAACGAAGTTTTGGTGCAGAAATAGGCCGGGAGACACTGTGCGTGATAGATATAACAATGGCATGCAAGGATATCCTGAGCAAAATCCGGTTGCTGGTCGCATGGGTGGTAATTTTGCAATGCCTGAAGGCCCAACAACTCCTGGACCATTTGCCCCTGGGTTGACTCGAAATGACGGCACCATTCCAGGTGTTGGAGTTGCCATGCCCTTATCTGTTCCTTCTCTTGATTTTTCTCAAGGGGAGCAGAAGCAGCCCCATCCTGCTTCAATGGGGGCTCCTCCTCTTCCCCCAGGTCCACATCCCTCTCTTCTTGCTTCTAATCAACAGCAACCATTCCAACAGAATCCACAGCAGATCCCACAACATCAACACCACCAGGCACTACCACAACAGTTGGGTCCTTTGCCTATGCCTCCAAATATGCAACAGCTACAGCACCCTTCCCATTCTCCTTTGCTCCCTCACCAACATTTGCCCCGCCCTCCGCCCCAAATGCCACTTGGAATGCCAGGATCAATACCAGGAATTTCATCAGTGCCTACTTCACATCCAATGCCAATGCCAGGACCTATGGGGATGCAACAAGGTGCAATGAATCAGATGGGCAATCCAATGCCGCAAGGTCCTTTTGTGGGCATGAATCAAATGCATTCAGGGCCTCCAAGTGGAGGGCCACCTCTTGGAGGTTTCCCAAACAACTTGCCTAATATGCAAGGGCCATCAAATACCAATTATCCTCAAGGTGCTTCCTTTAATAGACCTCAAGGTGGACAAATGCCCATGATGCAAGGCTATAATCCTTATCAGTCGGGAAATCAACCTGGTATGCCTCCGAACGCACAACCAGGAGGATCACACAATCAATGA | 2124 | 0.4619 | MSSLHPLENPSSTGPRTPLGESTEHRPEGSGLAAEEEGNGGLKRLPPPMARSGWSVSSPPSSAPTSKPKPPVKCITQRVSHLFSRNINQNTYGISERSSEWKSLLYRFSESKNFRAYSRKFCSGTQVMTRVKQNRSPVNLFYNSDIFKTWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEESSLTGHGWDVKSVDWHPSKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIVKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGHETPQIEISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDTVRDRYNNGMQGYPEQNPVAGRMGGNFAMPEGPTTPGPFAPGLTRNDGTIPGVGVAMPLSVPSLDFSQGEQKQPHPASMGAPPLPPGPHPSLLASNQQQPFQQNPQQIPQHQHHQALPQQLGPLPMPPNMQQLQHPSHSPLLPHQHLPRPPPQMPLGMPGSIPGISSVPTSHPMPMPGPMGMQQGAMNQMGNPMPQGPFVGMNQMHSGPPSGGPPLGGFPNNLPNMQGPSNTNYPQGASFNRPQGGQMPMMQGYNPYQSGNQPGMPPNAQPGGSHNQ* | 708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g2468 | 707 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 392 | 423 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | SUPERFAMILY | WD40 repeat-like | 146 | 426 | IPR036322 | GO:0005515 | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 306 | 340 | - | - | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 264 | 301 | - | - | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 306 | 347 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | MobiDBLite | consensus disorder prediction | 521 | 547 | - | - | |
| Lja3g2468 | 707 | MobiDBLite | consensus disorder prediction | 631 | 707 | - | - | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 348 | 380 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | SMART | WD40_4 | 215 | 254 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | SMART | WD40_4 | 384 | 424 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | SMART | WD40_4 | 299 | 338 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | SMART | WD40_4 | 134 | 170 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | SMART | WD40_4 | 341 | 381 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | SMART | WD40_4 | 257 | 296 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | SMART | WD40_4 | 173 | 212 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 264 | 305 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 348 | 380 | - | - | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 222 | 263 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | MobiDBLite | consensus disorder prediction | 653 | 707 | - | - | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 180 | 212 | - | - | |
| Lja3g2468 | 707 | Gene3D | - | 297 | 431 | IPR015943 | GO:0005515 | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 222 | 254 | - | - | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 392 | 423 | - | - | |
| Lja3g2468 | 707 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 180 | 212 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | PRINTS | G protein beta WD-40 repeat signature | 411 | 425 | IPR020472 | - | |
| Lja3g2468 | 707 | PRINTS | G protein beta WD-40 repeat signature | 241 | 255 | IPR020472 | - | |
| Lja3g2468 | 707 | PRINTS | G protein beta WD-40 repeat signature | 283 | 297 | IPR020472 | - | |
| Lja3g2468 | 707 | MobiDBLite | consensus disorder prediction | 573 | 587 | - | - | |
| Lja3g2468 | 707 | Gene3D | - | 77 | 296 | IPR015943 | GO:0005515 | |
| Lja3g2468 | 707 | PANTHER | WD40 REPEAT PROTEIN | 149 | 700 | IPR045245 | GO:0031124 | |
| Lja3g2468 | 707 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 283 | 297 | IPR019775 | - | |
| Lja3g2468 | 707 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Lja3g2468 | 707 | MobiDBLite | consensus disorder prediction | 460 | 587 | - | - | |
| Lja3g2468 | 707 | CDD | WD40 | 150 | 423 | - | - | |
| Lja3g2468 | 707 | Pfam | WD domain, G-beta repeat | 301 | 338 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | Pfam | WD domain, G-beta repeat | 261 | 296 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | Pfam | WD domain, G-beta repeat | 344 | 380 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | Pfam | WD domain, G-beta repeat | 178 | 211 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | Pfam | WD domain, G-beta repeat | 394 | 423 | IPR001680 | GO:0005515 | |
| Lja3g2468 | 707 | Pfam | WD domain, G-beta repeat | 223 | 254 | IPR001680 | GO:0005515 |