Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2465 ATGTCTATGCAGCACGAAAATTCTGATACAAAAGATGTATCAGCTCCACGGAAAAGACTGTCGAATCTGATGAATCAATCTGGGAACAAGTTTTGTGCTGATTGTGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTCGGGGTATTTATTTGCATCAAGTGCTCCGGCATACACAGAAGTCTAGGAGTCCACATAACAAAGGTTGTATCATTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGCATTGGAGAAGTTGGGTGGAAATACATCATTAAATAGGAAGTACGAAGCTTGCCTACCAAGTAATATGAAAAAACCAAAACCACATTCATCCATTGAAGAGCGCTCCGAGTTTATTAGGAGAAAATATGAGCTGCTACAGTTCATGGAGTGTGGTGACAATTTGTCATGCCAAATTGTACCATCTCAAGGGAGAAGTTTAACATTGGCTCATAGCAGTTCTTCATGTCACCATCCTCCTATGGACAAGAAACATTATGAGAAAAAACCGACCAAACATCATATTGGACTCACATTCCGAAATAGCCGGGGAAGAAAAGATTCTGAGCACAAGTCCTCATCAAAGAGGAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTACTGTTGTAAAAGGCAAGCACCTGGCGGTTCGAGATGTGATGTCCAGTGACCCATATGTCATCCTTTCTTTGGGTCACCAATCGGTAAAAACGCGCGTTATAAGGAACAATTTGAATCCAGTCTGGAATGAAAGCCTAATGCTATCAATTCCAGAGAACATTCCTCCTCTTAAAGTGCTTGTGTATGATAAGGATACATTTACAACCGATGATTTTATGGGTGAAGCTGAAATAGACATTCAACCTCTAGTTTTAGCTGCAATTGCGTATGAGAAATCGACAATCAACGAGTCCATGCAGCTTGAGAAATTTGTAGCAAGCAAGGATAACACTCTTGTTAGAGATGGTATCATCTCCCTTGAAGAAGGGAGGATCAAGCAGCAAATCGCGGTGAGGCTGCAGAATATTGAGAGAGGGGTGCTTGAGATTGAGCTTGAATGTGTTCCTCTCACTCAATAG 1104 0.4139 MSMQHENSDTKDVSAPRKRLSNLMNQSGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHITKVVSLKLDEWTDEQVDALEKLGGNTSLNRKYEACLPSNMKKPKPHSSIEERSEFIRRKYELLQFMECGDNLSCQIVPSQGRSLTLAHSSSSCHHPPMDKKHYEKKPTKHHIGLTFRNSRGRKDSEHKSSSKRSTSLAGMVEFVGLIKVTVVKGKHLAVRDVMSSDPYVILSLGHQSVKTRVIRNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGEAEIDIQPLVLAAIAYEKSTINESMQLEKFVASKDNTLVRDGIISLEEGRIKQQIAVRLQNIERGVLEIELECVPLTQ* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2465 367 ProSiteProfiles C2 domain profile. 194 309 IPR000008 -
Lja3g2465 367 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 10 367 - -
Lja3g2465 367 MobiDBLite consensus disorder prediction 153 199 - -
Lja3g2465 367 CDD ArfGap 20 126 - -
Lja3g2465 367 Gene3D C2 domain 209 365 IPR035892 -
Lja3g2465 367 CDD C2_ArfGAP 210 354 - -
Lja3g2465 367 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 208 302 IPR035892 -
Lja3g2465 367 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Lja3g2465 367 Pfam C2 domain 212 298 IPR000008 -
Lja3g2465 367 MobiDBLite consensus disorder prediction 183 197 - -
Lja3g2465 367 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Lja3g2465 367 Gene3D Arf GTPase activating protein 1 137 IPR038508 -
Lja3g2465 367 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Lja3g2465 367 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Lja3g2465 367 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Lja3g2465 367 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Lja3g2465 367 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Lja3g2465 367 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 367 IPR044518 GO:0005096|GO:0005543
Lja3g2465 367 SMART C2_3c 212 307 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2465 Lja-Chr3 30843019 30847482 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4178 3 81494988 81501409 Lja3g2465 3 30843019 30847482 PCT