Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2464 ATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCTCTCAAATTCGGCAACTTTAAGCTTAAATCAGGCATCTCCTCACCAATCTACATAGACCTTCGCCTAATTGTATCTTACCCATCTGTCCTGCGGCAAATTTCTCAAACTATGATCTCCTCTGTCTCCTCCACTTCATTTGACCTTGTCTGTGGTGTTCCTTACACTGCTCTGCCCATTGCTACTTGTGCCTCTGTCACTCACAACATCCCGATGGTCATGCGCCGCAAGGAAATCAAAGACTATGGCACATCTAAAGCCATTGAAGGTGATTTCAAGCATGGCCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGCGGCACGTCGGTTTTGGAAACTGCTGCGCCGCTGCGTGCTACGGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGAGTAATGGAATCAAGCTGCATGCTATTCTTAAGTTGACTGAAATGGTGAAGATTTTGAAGGAAAAAGGAAAGCTTGATCAAGAGATGGTAGGGGTTGTTATGAGATTCTTAGAGGAAAATCAGAAGGTTGCTGCTTTGGCAATTAAAGCTAAGGTCAAGGCATTGCCATATTTGAAGAGGGCTAATTTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGAAAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGCAATTGCTGACATGGTTGGGCCTGAGATATGCTTGCTGAAAACTCATGTGGATATTCTTCCAGATTTTACTCCTGATTTTGGTTCTAAGCTTCGCAAGATTGCAGAAAAACACAACTTTTTAATCTTTGAGGACCGTAAATTTGCTGACATTGGTAACACAGTGACCATGCAGTATGAAGGAGGGATCTATCATATATTGGATTGGGCTGATATAGTGAATGCTCATATAATCTCTGGTCCTGGAATTGTGGATGGACTAAAATTGAAGGGTTTGCCTCGCGGAAGGGGTCTGTTGCTGCTCGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACCAATGCTGCAGTGAAAATTGCTGAGGATCACTCTGACTTTGTTATTGGCTTTATCTCAGTCAATCCAGCATCATGGCCCGGGGCACCCATAAATTCCTGTTTCATCCATGCCACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGGCAGCAATATAATACTCCATATTCTGTAATCCATGAAAAGGGCAGTGACATAATCATAGTGGGTCGCGGCATCATCAAGGCAGAAAATCCGGCTGAGGCAGCCCGCAAATATCGTCTTCAAGGATGGAGTTCATATATAGCCAAGTGCAGCTAA 1407 0.4392 MESLVLQLHEISALKFGNFKLKSGISSPIYIDLRLIVSYPSVLRQISQTMISSVSSTSFDLVCGVPYTALPIATCASVTHNIPMVMRRKEIKDYGTSKAIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRATGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVKILKEKGKLDQEMVGVVMRFLEENQKVAALAIKAKVKALPYLKRANLSKNPTGKRLFEIMAEKESNLCLAADVGTAAELLAIADMVGPEICLLKTHVDILPDFTPDFGSKLRKIAEKHNFLIFEDRKFADIGNTVTMQYEGGIYHILDWADIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTNAAVKIAEDHSDFVIGFISVNPASWPGAPINSCFIHATPGVQMVTGGDALGQQYNTPYSVIHEKGSDIIIVGRGIIKAENPAEAARKYRLQGWSSYIAKCS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2464 468 SUPERFAMILY Ribulose-phoshate binding barrel 210 463 IPR011060 -
Lja3g2464 468 SUPERFAMILY PRTase-like 3 191 IPR029057 -
Lja3g2464 468 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 468 - -
Lja3g2464 468 TIGRFAM pyrE: orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Lja3g2464 468 Pfam Phosphoribosyl transferase domain 55 152 IPR000836 -
Lja3g2464 468 Gene3D - 1 205 IPR029057 -
Lja3g2464 468 CDD PRTases_typeI 59 166 IPR000836 -
Lja3g2464 468 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 224 IPR023031 GO:0004588|GO:0006221
Lja3g2464 468 Gene3D Aldolase class I 206 468 IPR013785 -
Lja3g2464 468 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
Lja3g2464 468 CDD OMP_decarboxylase_like 238 455 - -
Lja3g2464 468 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Lja3g2464 468 PANTHER PHOSPHORIBOSYLTRANSFERASE, OROTIDINE 5-PHOSPHATE DECARBOXYLASE 1 468 - -
Lja3g2464 468 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
Lja3g2464 468 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2464 Lja-Chr3 30834552 30838723 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2464 3 30834552 30838723 Lja3g2464 3 30834552 30838723 ECH
Lja3g4177 3 81481367 81485490 Lja3g2464 3 30834552 30838723 PCT