Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g2436 | ATGAGTCGAGGAAGTGGAGGCGGCTACGATCGCCACATCACCATCTTCTCCCCTGAAGGCCGTCTCTTCCAAGTTGAGTATGCTTTCAAGGCTGTTAAGGCGGCCGGGATAACGTCAATTGGTGTCCGTGGAAAGGATTCGATTTGTGTTGTTACTCAGAAGAAGGTTCCGGACAAGCTGCTGGATCAGACAAGTGTTTCACATCTCTTTCCCATTACAAAGTATCTTGGTTTATTGGCAACTGGCATGACAGCTGATGCTAGGACACTGGTTCAACAAGCAAGAAATGAAGCAGCTGAATTTCGGCACACATATGGATATGAGATGCCTGTGGACGTATTAGCTAAATGGATTGCTGATAAATCACAAGTCTATACTCAGCATGCTTATATGAGACCTCTTGGAGTAGTTGCTATGGTTTTGGGTATTGATGACGAAAATGGGGCTCAGCTTTACAAATGCGATCCTGCTGGCCATTACTTTGGTCACAAGGCCACAAGTGCTGGATTGAAGGACCAAGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGACCCTTCATTTACCTATGAGGAGACAGTTCAGACTGCCATTTCTGCCTTACAATCAGTTCTTCAGGAGGATTTTAAGGCCACTGAGATTGAGGTTGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTCTATCCACCGATGAGATTGATGAGCACTTGACTGCAATAAGCGAGCGTGATTGA | 741 | 0.4507 | MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRHTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGAQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLSTDEIDEHLTAISERD* | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g2436 | 246 | ProSitePatterns | Proteasome alpha-type subunits signature. | 9 | 31 | IPR000426 | GO:0006511|GO:0019773 | |
| Lja3g2436 | 246 | Pfam | Proteasome subunit A N-terminal signature | 9 | 31 | IPR000426 | GO:0006511|GO:0019773 | |
| Lja3g2436 | 246 | SMART | Proteasome_A_N_2 | 9 | 31 | IPR000426 | GO:0006511|GO:0019773 | |
| Lja3g2436 | 246 | Pfam | Proteasome subunit | 36 | 220 | IPR001353 | GO:0005839|GO:0051603 | |
| Lja3g2436 | 246 | CDD | proteasome_alpha_type_6 | 8 | 220 | IPR034642 | GO:0019773 | |
| Lja3g2436 | 246 | PANTHER | PROTEASOME SUBUNIT ALPHA TYPE-6 | 1 | 243 | - | - | |
| Lja3g2436 | 246 | PANTHER | PROTEASOME SUBUNIT ALPHA/BETA | 1 | 243 | - | - | |
| Lja3g2436 | 246 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 1 | 246 | IPR029055 | - | |
| Lja3g2436 | 246 | ProSiteProfiles | Proteasome alpha-type subunit profile. | 24 | 239 | IPR023332 | - | |
| Lja3g2436 | 246 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 8 | 245 | IPR029055 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g2436 | Lja-Chr3 | 30096592 | 30102257 | Transposed |