Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2430 ATGGTGTTGTCAGCTTCGCCATGTTCTTTGGCGAGAAGCTCGCTGGAAGAGATGCTTGATTCGCTTCGTCGGAGGGATGAAGAGGAAGAGACGAAGAAGGACTCGCCGCCGGCGTTGCCCGCTCGGCCGGCTTCCAAGGCTCGGCTTCCTCCGGCGCGGCGGTCGCTGCCGAATAACTTTAAGGTTGGTGGTGGTGACCGCGGTGGCGCGGTGGAGAATGGATTTGCTGTCAGCAATGTGGAGATTAAGAGGAAGGAAACGGGTGTTGTAGACAAGAGAAGTAGTAGCAGTTTTGGGAGTAAGAGGGTGAAGAAGGATGTGGAGTCTCCTTATGTGATAGCACTTTCAGAATTCACTGGTTTATCTGGGATGAGTTTGGAATTGGAGGGTGACAGTGTTTCTCATTTCATCAAAACGAAGCTTCGTGTTTGGTGTAGGCAACCAAGAGGGAAATGGGAACTAGGATCAATAAAGTCAACTTCTGGAGAGGAAGCATCCGTTTCACTTTCAAATGGCAATGTTGTGAAAGTGGCCAGATCAGAGCTCTTACCTGCTAATCCTGATATTTTAGACGGTGCGGATGATCTTATTAAACTTGGTTATCTGAATGAACCATCAGTTCTTCACAATCTTAAGTTTAGATATTCTCAGGATATGATTTATACTAAAGCAGGCCCCATTTTAATCGCACTAAATCCTTTGAAAGATCTCACTCTTTATGGAAATGATTATATCTCAACTTATAGGCAGAGATTAATTGATAGTCCTCATGTTTATGCTATGGCAGATGCTGCTTATAACAAGATGATAAGAGATGAAGTAAATCAATCCATAATCATTAGTGGTGAGAGTGGGTCTGGGAAGACAGAGACAGCTAAAATCGCCATGAAATACTTATCTGCTCTTGGTGGTGGCAGCTGTGGGATAGAAAAAGAAGTTCTTCAGGCAAATTTTATACTAGAAGCTTTTGGGAATGCAAAATCATGTAGCAATGACAACTCTAGCAGATTTGGAAGTTTGATTGAAATTCATTTCAGCACCATGGGTAAAATGTGTGGGGCTAAAATTCAAACATATCTGTTGGAAAAGTCAAGAGTAGTTCAACTGGCTGTTGGCGAGAGGTCTTATCACATATTTTATCAACTCTGTGCTGGATCTTCACCTGGTCTTAAAGAAAGACTGAATCTTAGATCAGTCAGCGATTATAAATATCTAAATCAGAGTGGTTGTGCGACAATTGGTGGTGTTGATGATGCTAAAAACTTTCATCAGCTGATGGAAGCATTGGATACTGTTAGAATTTGTAAAGAGGACCAGGAGCTGATCTTTAAGATGCTTGCAGCAATACTATGGTTGGGAAATATAACATTCCAAGTAACTAACAATGAAAATCATATTGAGGTTGTGGATGATGAAGCTGTAACCAGTGCTGCCCTGCTGATGGGTTGCAGTTCTCAAGAATTAATGGCAGCATTATCTACCTGTAAAATCCAATCTGACAAGGATACCATTGCCAAAAGTTTGACATTGTCACAGGCAATCAATACAAGAGATGCAATTGCAAAATTTATCTATGCAAGCTTGTTTTACTGGCTTGTAGAGCAAATTAACAAGTCACTTAAAGCCGGTAAAAAATGTGCTGGGAAATCCATAAGCATCCTTGACATTTATGGTTTTCAGTCATTACAGAAAAACAGCTTTGAACAGTTTTGTATAAATTATGCCAATGAGAGGCTTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTATGAGTTGGATGGAGTAGATTGGACCACAATAGATTTTGAGGACAATCAAGAGTGCTTGGATCTATTTGAGAAGAAACCTCTTGGTCTACTCTCTTTGTTAGATGAGGAATCAAATTCCCCCAGTGCTTCTGATTTAACATTTGCCAACAAACTTAATCAACTGCACGGTAATCCTTGCTTCAAAGGGGGAAAAGACAGCGCTTTCAGTGTTCGCCACTATGCAGGGGAGGTTTTGTATGATACAAATGGTTTTCTAGAAAAGAACAGAGATACACTGTCTTCTGACTTCATTCAACTCCTGTCATCGTGTAATTGTGAACTGCTTCAGTTATTCTCCAAAATGTTTAATCAGTCTCAGAAACAACCAAATTCCTCCTTCCACATTGGTTCACTGGACTCACAGAAGCAGGGTGTTGGAACAAAGTTCAAGGATCAATTGTTCAAGTTGATACATCAGGTGGAGAGCACTGCACCTCACTTTATTCGCTGCATAAAACCAAATACGAAGCAGCTTCCTGGAATTTATGAGGATGATCTTGTCCTACAACAGCTCAGGTGTTGTGGAGTTCCAGAAGTTGTTCGGATTTCTAAGGCAGGATATCCTACTCGCATGACTCATCAAGAGTTTTCCAGAAGGTATGGGTTTCTGCTTTCTGAGGCCATTGTATCTCAGGATCCATTGAGTATCTCAGTCGCTGTTTTGCACAAATATGATACCCCTTCTGAAATGTACCAAGTTGGCTACACCAAACTGCACCTTCGAGCAGGGCAGATTAATGCACTGGAGGATAAGAGAAAGCAGCTTTTGCAGGGAGTACTTACGATTCAAAAATGCTTCCGTGGTCATCAAGCTCGCAGTAATTTCTGTGAACTTAAGAGTGGAGTGGCAACCTTGCAATCATTTATTCGTGGAGAAATTACGAGAAGGAAGTCTGGTGTTATGATGAAGTCTTCTATAACAATTTATTCTAAAAAGCTTGAAGAGATACATGCAATCATACTACTACAATCTGTAATTCGTGGGTGGCTGGTTCGAAGTGATTCTAGCAATATGAAGTTGAGGAAACATGAAAATGACAAACCTAGGTGGAAGTCTCGAGTTAAGATTCCAGAAGTGAAGGATTTGTCCAAAGACCTGGTTCAGAATCTGCCTTCAGCTTTAGCAGAACTCCAAAAGCGGTTTTATAAGGCTGAAGCAATTTTGGAGCAAAAGGAAGAGGAAAATACTGAGTTGAAGGAACAGTTAAAACAATCTGAGAGAAAGAGGGTTGAATTTGAGGCGAAGATGAAATCAATGGAGGAGGCATGGAAAAAGCAGATGACATCTTTGCAAATGAGTCTTGTTGCTGCTAAAAAGAGCCTTGCTTCTGAGAATGGCACTGTTCAACCTGTAAGAAGTGATCCTTTGTCACCTCGTGGCTATGATTCTGAAGATACTACTTCCATGGGATCTCGAACAACTGGTGGGAACACACCTCTGATGTTATCAGGGAGTCTCTCTGTCTCAGATCCAAGGAGACAGGCTAACGGTACATTGACTACTGTCAGCAGTCTGATGAGGGAATTTGACCAACAAAGACATACATTTGATGATGAAGTGAAAGCTCTGACTGAGGTAAAACCAGGGCAGTCTGTAAACACGAATTCCATTGAAGAACTTCGGAAGCTCAAACGTACATTTGAGGGATGGAAGAAACAGTACAAAGTTAGATTACGTGAGACAAAAGCAAGGCTTCATAAATTAGGGAATTCAGAATCTGAAAGAAGTCGGCGGACATGGTGGGGAAAATTAAGGGCATAA 3585 0.4142 MVLSASPCSLARSSLEEMLDSLRRRDEEEETKKDSPPALPARPASKARLPPARRSLPNNFKVGGGDRGGAVENGFAVSNVEIKRKETGVVDKRSSSSFGSKRVKKDVESPYVIALSEFTGLSGMSLELEGDSVSHFIKTKLRVWCRQPRGKWELGSIKSTSGEEASVSLSNGNVVKVARSELLPANPDILDGADDLIKLGYLNEPSVLHNLKFRYSQDMIYTKAGPILIALNPLKDLTLYGNDYISTYRQRLIDSPHVYAMADAAYNKMIRDEVNQSIIISGESGSGKTETAKIAMKYLSALGGGSCGIEKEVLQANFILEAFGNAKSCSNDNSSRFGSLIEIHFSTMGKMCGAKIQTYLLEKSRVVQLAVGERSYHIFYQLCAGSSPGLKERLNLRSVSDYKYLNQSGCATIGGVDDAKNFHQLMEALDTVRICKEDQELIFKMLAAILWLGNITFQVTNNENHIEVVDDEAVTSAALLMGCSSQELMAALSTCKIQSDKDTIAKSLTLSQAINTRDAIAKFIYASLFYWLVEQINKSLKAGKKCAGKSISILDIYGFQSLQKNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGVDWTTIDFEDNQECLDLFEKKPLGLLSLLDEESNSPSASDLTFANKLNQLHGNPCFKGGKDSAFSVRHYAGEVLYDTNGFLEKNRDTLSSDFIQLLSSCNCELLQLFSKMFNQSQKQPNSSFHIGSLDSQKQGVGTKFKDQLFKLIHQVESTAPHFIRCIKPNTKQLPGIYEDDLVLQQLRCCGVPEVVRISKAGYPTRMTHQEFSRRYGFLLSEAIVSQDPLSISVAVLHKYDTPSEMYQVGYTKLHLRAGQINALEDKRKQLLQGVLTIQKCFRGHQARSNFCELKSGVATLQSFIRGEITRRKSGVMMKSSITIYSKKLEEIHAIILLQSVIRGWLVRSDSSNMKLRKHENDKPRWKSRVKIPEVKDLSKDLVQNLPSALAELQKRFYKAEAILEQKEEENTELKEQLKQSERKRVEFEAKMKSMEEAWKKQMTSLQMSLVAAKKSLASENGTVQPVRSDPLSPRGYDSEDTTSMGSRTTGGNTPLMLSGSLSVSDPRRQANGTLTTVSSLMREFDQQRHTFDDEVKALTEVKPGQSVNTNSIEELRKLKRTFEGWKKQYKVRLRETKARLHKLGNSESERSRRTWWGKLRA* 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2430 1194 SMART MYSc_2a 185 862 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g2430 1194 ProSiteProfiles IQ motif profile. 923 952 IPR000048 GO:0005515
Lja3g2430 1194 Pfam IQ calmodulin-binding motif 867 883 IPR000048 GO:0005515
Lja3g2430 1194 Pfam IQ calmodulin-binding motif 925 941 IPR000048 GO:0005515
Lja3g2430 1194 Gene3D - 560 751 - -
Lja3g2430 1194 MobiDBLite consensus disorder prediction 1068 1101 - -
Lja3g2430 1194 PANTHER MYOSIN 122 1192 - -
Lja3g2430 1194 Coils Coil 982 1030 - -
Lja3g2430 1194 SMART iq_5 885 907 IPR000048 GO:0005515
Lja3g2430 1194 SMART iq_5 862 884 IPR000048 GO:0005515
Lja3g2430 1194 SMART iq_5 922 944 IPR000048 GO:0005515
Lja3g2430 1194 MobiDBLite consensus disorder prediction 17 36 - -
Lja3g2430 1194 Gene3D - 794 862 - -
Lja3g2430 1194 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 138 187 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja3g2430 1194 MobiDBLite consensus disorder prediction 1053 1101 - -
Lja3g2430 1194 ProSiteProfiles IQ motif profile. 863 892 IPR000048 GO:0005515
Lja3g2430 1194 MobiDBLite consensus disorder prediction 1175 1194 - -
Lja3g2430 1194 CDD MYSc_Myo8 205 849 IPR036022 -
Lja3g2430 1194 Coils Coil 12 32 - -
Lja3g2430 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 946 IPR027417 -
Lja3g2430 1194 Gene3D Myosin VI head, motor domain, U50 subdomain 435 729 - -
Lja3g2430 1194 Pfam Myosin head (motor domain) 194 849 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g2430 1194 ProSiteProfiles IQ motif profile. 886 915 IPR000048 GO:0005515
Lja3g2430 1194 PANTHER MYOSIN-2 ISOFORM X1 122 1192 - -
Lja3g2430 1194 Gene3D Kinesin motor domain 194 790 IPR036961 -
Lja3g2430 1194 Gene3D - 865 913 - -
Lja3g2430 1194 Gene3D - 374 433 - -
Lja3g2430 1194 ProSiteProfiles Myosin motor domain profile. 191 861 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g2430 1194 MobiDBLite consensus disorder prediction 17 65 - -
Lja3g2430 1194 PRINTS Myosin heavy chain signature 275 300 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g2430 1194 PRINTS Myosin heavy chain signature 221 240 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g2430 1194 PRINTS Myosin heavy chain signature 603 631 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g2430 1194 PRINTS Myosin heavy chain signature 318 345 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja3g2430 1194 PRINTS Myosin heavy chain signature 550 578 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2430 Lja-Chr3 29818400 29829904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2430 1 1191 Myosins gene family AT5G54280 58.495 0.0 1417