Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2415 ATGATAACCGAACCCTTGGATCTGCTTCGCTCCAATCTCTCCCGCGTTCGGATCCCCGAACCCACCAATCGCATCTTCAAGCACGAATGCTGCGTTTCTTTCGACACTCCGAAGTCGGAAGGTGGTTTGTTCGTCGACATGTCCACATTTCTTGCTTTCGGGAAAGAGTTTGTCGCTTGGAATTATGAGAAGACTGGAAATCCTGTCTATTTGCATATAAAGCAGACAAAGAAGACAGATCCCGAAGATAGGCCTACGAAGAAACCAACTCTCTTGGCTATAGGTGTTGAAGGTGGATTTGATAACAATGAAGTTGAGTACGAGGAGACTCATAGTGTAGTTATATTACCTGACTATGTATCTCTTCCGTTCCCTTCTGTGGAATTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCAATCTTACTAGCTGATGGGGCTGAACGGAAGGATCAACTTGCAGCTTGGACTGCTGATACGAAAAAAGTTAGTGCCTATGCGATGAATTTACAACAGATTGACAATGGCGTGGTTATTCCGCCATCTGGGTGGAAATGTGCCAAGTGTGATAAGAAGGACAATCTTTGGCTGAATTTAACTGATGGAATGATGCTCTGTGGGAGGAAAAACTGGGATGGAACTGGTGGAAATAACCATGCTATTCAGCATTACGAACAGACAGGCTACCCTCTTGCTGTAAAGCTTGGGACTATTACTGCAGACCTGGAAGCAGCAGATGTTTTTTCATACCCAGAGGATGACAGTGTCTTGGATCCACTATTAGCACAGCATCTGGCATTTTTTGGCATTGACTTTTCATCACTACAGAAGACTGAAATGACGACTGCTGAAAGAGAACTTGACCGAAATACAAATTTTGATTGGAATCGAATTCAAGAAAGTGGACAAGATGTTGATCCAATTTTTGGACCCGGATATACGGGATTGGTCAACATTGGTAACAGTTGTTACATGGCAGCGACTATGCAAGTTGTGTTTTCGACGAGATCCTTCATACAACGGTACTACTCAAACCAAAGTCTAAAGAAGGCATTTGATGTGTCTCCCGCTGATCCAACTGTTGACCTGCATATGCAGTTGACTAAATTGGCGCATGGTCTACTTTCTGGTAAATACTCTGTTCCAGCATTTGAGAATGATGATAAAGAAAATGTGGCTACCTCAACTACAACAGCTAAACAACAAGGCATACACCCACATATGTTCAAATCTGTAATTGCTGCAAGCCATCCTGAATTTTCATCTGTACGGCAACAGGATGCATTAGAATTTTTCCTACATTTTATTGACCAAGTTGAACGAGCTAATGCTGGGAAAACTGAACTGGATCCAGCAAGGAGTTTCAAGTTTGGTATTGAAGATAAAATTTTGTGTTCATCTGGAAAAGTTGCATATAATAAAAGAAATGACTACATTCTTTCTCTCAATATCCCTTTGCTTGAAGCAACTAACAAAGAAGAATTAGCTTCCTTTCAAAAACTGAAAGCAGAGAAGCTTGCAGAGGGAAAGGAAATTGGTGGTGATGAGATTGTGCGTCCAAGGGTGCCTTTAGAAGCTTGCCTTGCAAACTTCTCTGCTCCTGAGGAGATACATGATTTTTACAGCACTGCTCTGAAAACAAAGACGACAGCACTGAAGACTGCAGGTCTGACTTCATTTCCTGATTACCTGGTGTTACATATGCGGAGATTTGTTATGGAGGTAGGATGGGTACCCAAAAAGCTAGATGTATACATTGATGTTCCTGATATCATAGATATCAGTCATATGCGGAGCATAGGTCATCAGACTGGGGAAGAGCTGTTACCTGATGGAGCACCTGATGAGGAAGATTCAAACAAACTTGTGGCCAATGAAGAAATTGTCTCGCAGCTTGTTTCCATGGGCTTTAATCATCTACATTGTCAGAAAGCTGCTATAAATACATCAAATGTTGGAGTGGAAGAAGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATTGACAATCCGATTGCCGAAAGTTCGGAAACTTTGACAAATGTTGACCAATCAAAAGTTGATACTCTAATTTCGTTTGGATTTCAAGAAGAGATTGCTAGAAAGGCACTGAAGGCATCGGGTGGTGATATTGAGAAAGCAACAGATTGGATATTTACCAGTCCTGACGCGTCAGTCTCCAGTATGGATGCTACCTCATCAGATGCTACCTCAACTCACAATGATGTCAGTCTGCCTGATGGAGGAGGGAAATATCGCCTTATGGGAGTTGTTAGCCACAGTGGAACCTCAGTGCATTGTGGTCACTATGTTGCTCACATTTTAAAAGATGGTAGATGGGTGATTTTCAATGACGACAAAGTTGGGGCTTCCATAAGTCCTCCCAAGGAAATGGGGTATTTGTACTTCTACGAGAGGCTTAATGAATGA 2433 0.4221 MITEPLDLLRSNLSRVRIPEPTNRIFKHECCVSFDTPKSEGGLFVDMSTFLAFGKEFVAWNYEKTGNPVYLHIKQTKKTDPEDRPTKKPTLLAIGVEGGFDNNEVEYEETHSVVILPDYVSLPFPSVELPEKVRLAVDAILLADGAERKDQLAAWTADTKKVSAYAMNLQQIDNGVVIPPSGWKCAKCDKKDNLWLNLTDGMMLCGRKNWDGTGGNNHAIQHYEQTGYPLAVKLGTITADLEAADVFSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTEMTTAERELDRNTNFDWNRIQESGQDVDPIFGPGYTGLVNIGNSCYMAATMQVVFSTRSFIQRYYSNQSLKKAFDVSPADPTVDLHMQLTKLAHGLLSGKYSVPAFENDDKENVATSTTTAKQQGIHPHMFKSVIAASHPEFSSVRQQDALEFFLHFIDQVERANAGKTELDPARSFKFGIEDKILCSSGKVAYNKRNDYILSLNIPLLEATNKEELASFQKLKAEKLAEGKEIGGDEIVRPRVPLEACLANFSAPEEIHDFYSTALKTKTTALKTAGLTSFPDYLVLHMRRFVMEVGWVPKKLDVYIDVPDIIDISHMRSIGHQTGEELLPDGAPDEEDSNKLVANEEIVSQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDPDIDNPIAESSETLTNVDQSKVDTLISFGFQEEIARKALKASGGDIEKATDWIFTSPDASVSSMDATSSDATSTHNDVSLPDGGGKYRLMGVVSHSGTSVHCGHYVAHILKDGRWVIFNDDKVGASISPPKEMGYLYFYERLNE* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2415 810 SUPERFAMILY Cysteine proteinases 309 808 IPR038765 -
Lja3g2415 810 SMART uba_6 624 662 IPR015940 -
Lja3g2415 810 SMART uba_6 684 721 IPR015940 -
Lja3g2415 810 CDD Peptidase_C19B 314 806 - -
Lja3g2415 810 ProSiteProfiles Zinc finger UBP-type profile. 161 271 IPR001607 GO:0008270
Lja3g2415 810 Gene3D Cysteine proteinases 306 809 - -
Lja3g2415 810 Gene3D - 605 675 - -
Lja3g2415 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 115 IPR013083 -
Lja3g2415 810 SUPERFAMILY RING/U-box 163 271 - -
Lja3g2415 810 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 313 808 IPR028889 -
Lja3g2415 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 682 722 IPR015940 -
Lja3g2415 810 Pfam Variant UBP zinc finger 16 78 IPR041432 -
Lja3g2415 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 753 771 IPR018200 GO:0004843|GO:0006511
Lja3g2415 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 258 IPR013083 -
Lja3g2415 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 809 - -
Lja3g2415 810 PIRSF UBP 8 809 IPR016652 GO:0004843|GO:0016579
Lja3g2415 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 809 - -
Lja3g2415 810 SUPERFAMILY UBA-like 676 724 IPR009060 GO:0005515
Lja3g2415 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Lja3g2415 810 Pfam Ubiquitin carboxyl-terminal hydrolase 313 805 IPR001394 GO:0004843|GO:0016579
Lja3g2415 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 314 329 IPR018200 GO:0004843|GO:0006511
Lja3g2415 810 SMART Zf_UBP_1 184 239 IPR001607 GO:0008270
Lja3g2415 810 Pfam Zn-finger in ubiquitin-hydrolases and other protein 185 258 IPR001607 GO:0008270
Lja3g2415 810 CDD UBA1_atUBP14 624 668 - -
Lja3g2415 810 Pfam UBA/TS-N domain 684 719 IPR015940 -
Lja3g2415 810 Pfam UBA/TS-N domain 624 660 IPR015940 -
Lja3g2415 810 Gene3D - 676 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2415 Lja-Chr3 29585155 29597998 Dispersed