Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2269 ATGAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAATGGAGAAGAAGAAGTACCCCATTGGTTCTGACCATTACACACTCTACGAAGAGATTGGCCAAGGTGTCAGCGCTTCCGTCCACCGCGCTCTCTGCGTCCCCTTCAACGAGGTCGTCGCCATCAAAATCCTCGACTTCGAACGTGACAATTGCGATCTGAACAACGTTTCACGTGAAGCTCAAACAATGGTTCTGGTGGACCACCCTAACGTGTTGAAATCGCACTGCTCCTTCGTCAGCGACCACAGCTTATGGGTGGTGATGCCGTTCATGGCGGGAGGATCGTGTCTTCACATATTGAAAGCCGCGCATCCTGATGGATTCGAGGAGGTTGTTATTGCAACCGTGCTTAGGGATGTGCTCAAGGGTTTGGAGTATCTTCACAACCATGGTCACATTCACAGGGATGTTAAGGCTGGCAACATTCTCATCGGTTCGCGCGGCTCGATTAAGCTCGGGGATTTTGGTGTATCTGCTTGCCTTTTTGATTCCGGTGACCGGCAGCGGTCCAGGAATACGTTCGTCGGAACGCCTTGCTGGATGGCACCCGAGGTCATGGAGCAATTGCACGGTTATAACTTCAAAGCTGACATCTGGTCATTTGGTATAACTGCATTGGAGCTTGCACATGGTCATGCTCCTTTCTCCAAGTTTCCACCATTGAAGGTATTGCTTATGACTTTGCAAAATGCACCCCCTGGCCTTGACTATGAAAGAGATAGGAAGTTCTCTAAGTCTTTCAAGCAGATGATTGCTAGTTGCTTAGTAAAAGATCCTTCAAAGCGACCCTCTGCAAGCAAGTTGTTAAAGCATTCCTTCTTTAAGCAGGCTCGCTCCAATGATTTTATTGGACGGACACTTTTGGAGGGGCTACCTGCTTTAGGTGACCGCATGCAGCTCCTAAAGAGAAAAGAAGAAGATATGCTTGCACAAAAGAAAATGCCTGATGGGGAGATGGAGGAATTATCACAGAATGAATACAAACGAGGAATTAGTGGGTGGAACTTCAATCTTGAAGATATGAAGGCTCAGGCTTCCTTGATCCATGATTTTGACGATGCTATGTCAGACATCAATCATGTGGGAAGTGCATCTTCTTTAGCTACACTTGATGCACAAGATAAGGAATTGCCAAGTGCAAACCATATGGAAGAAAATGAAATGCAAAATCAATCAGCTTCTGTTCCAGCAGTTGATTCTTCTGTAAATGATGCCAAGTCAAGGTTAGAAAAATCTGATGATGACTCTAGCATCACCAGTTCAAGCCATGAACCGCAAACATATTCTTCCTGTCTTGATGATCAAGTGGACAATAATTTGGGTGAAAAATCTGAAATAGAAAATGGTGGAAGATTCTTGGAGAGCATGGCAACCCATTCTTATCATAGAAGAGGATGTTCATCAAGCATCTTACCTGAAGTTACTCTTCCACCTATTCGAGCAGAATGTGAGAAGCCACAGAATCTGCTGCAGAACATTTCAATTCCACAGTCAGGAGAGGATGTGCTTACTGAACTTCCTTCTAGAGCCTCCAAAACTTCAGCTACTTCTGATGACACTGATGAGAAATCTAAGATACCGGTTGTTCAACAGAGAGGACGTTTTAAGGTTACATCTGAGAATGTTGAGCCAGAAAAGGTTGCTCCTTCTCCTGTGCTGCAAAAGAGTCACAGCATGCAGGTTTTTACCCAGCATACTGCTACTCCTCTACAATCAAATTTACCTTTGTTATCAGCATCTGATGCTTCATCATCAAATCTTTCTGGCTGTTCTCTGTTCCCCATGTTGCAATCTGTGTTGCAGACAAATATTATTCAAAGGGAGAGCATTCTAAGTTTAATGAAACAAATTACTGTGGGTGACTCTACAGGTTCAACCGCTTTCTCTGATGGCGCAAGTAACACAGCACCAGTAGCAGGGATTGAGAAATCTTTGCTTGAAGCAGCTCACGATAGGGAGAAAGAGTTACTTCATGAGATAACTGAACTGCAGTGGAGGCTCTTATGTACCCAGGATGAGCTTCAAAAATTAAAAACAGAAAACGCCCAGGTGCAAGAAGAGAGGAGAATTTTAACCAGTACTAATTCATTGACTAGATACGGAGTGGTTTGCTACTTGTAG 2166 0.4414 MKEKEKEKEKEKEKEMEKKKYPIGSDHYTLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNCDLNNVSREAQTMVLVDHPNVLKSHCSFVSDHSLWVVMPFMAGGSCLHILKAAHPDGFEEVVIATVLRDVLKGLEYLHNHGHIHRDVKAGNILIGSRGSIKLGDFGVSACLFDSGDRQRSRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPLKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDFIGRTLLEGLPALGDRMQLLKRKEEDMLAQKKMPDGEMEELSQNEYKRGISGWNFNLEDMKAQASLIHDFDDAMSDINHVGSASSLATLDAQDKELPSANHMEENEMQNQSASVPAVDSSVNDAKSRLEKSDDDSSITSSSHEPQTYSSCLDDQVDNNLGEKSEIENGGRFLESMATHSYHRRGCSSSILPEVTLPPIRAECEKPQNLLQNISIPQSGEDVLTELPSRASKTSATSDDTDEKSKIPVVQQRGRFKVTSENVEPEKVAPSPVLQKSHSMQVFTQHTATPLQSNLPLLSASDASSSNLSGCSLFPMLQSVLQTNIIQRESILSLMKQITVGDSTGSTAFSDGASNTAPVAGIEKSLLEAAHDREKELLHEITELQWRLLCTQDELQKLKTENAQVQEERRILTSTNSLTRYGVVCYL* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2269 721 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 16 698 - -
Lja3g2269 721 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Lja3g2269 721 ProSiteProfiles Protein kinase domain profile. 28 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2269 721 Gene3D Phosphorylase Kinase; domain 1 16 105 - -
Lja3g2269 721 MobiDBLite consensus disorder prediction 519 540 - -
Lja3g2269 721 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 16 698 - -
Lja3g2269 721 Pfam Protein kinase domain 28 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2269 721 SUPERFAMILY Protein kinase-like (PK-like) 26 290 IPR011009 -
Lja3g2269 721 Gene3D Transferase(Phosphotransferase) domain 1 109 337 - -
Lja3g2269 721 Coils Coil 675 709 - -
Lja3g2269 721 MobiDBLite consensus disorder prediction 419 433 - -
Lja3g2269 721 MobiDBLite consensus disorder prediction 400 416 - -
Lja3g2269 721 MobiDBLite consensus disorder prediction 434 451 - -
Lja3g2269 721 SMART serkin_6 28 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2269 721 CDD STKc_OSR1_SPAK 26 289 - -
Lja3g2269 721 MobiDBLite consensus disorder prediction 400 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2269 Lja-Chr3 27193086 27209342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2269 16 681 MAP Kinase Kinase Kinase Kinase AT1G79640 64.549 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Lja3g2269 Pkinase 3.1e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2269 K08835 - gmx:100780339 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2269 3 27193086 27209342 Lja3g2269 3 27193086 27209342 ECH