Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1888 ATGTGCTACTTGAAGACTCAATATGTGCGAGCAGATAACAGTGCTCTTCGAATTGAGAATGAAAGGATTCAGAAAGAAAACCCCGTCAATGAGGCACTGAAGAAGATTATTTGTGCATTTTATGGGAGTCCATCATTTCCTCAAGAAGAGCATGAACTTTTCATGCAAAAAATGAGACTTGAAAATGCTCAGCTAAAAGACGAGTGTAAGAAATTGAATAACTTTCTTAAAAGTCTCATGGAGAGCCAAGTGTCACAACAAGAGCTGCAACTTGGGCTTATTCCCATCATAGGATCTTCACATGACCCAACGCTTGCAAGCTTGCTGAACCAAGAGGCTTATGGGAGTGGAGTTGGAAGCTCAAGTCTTGGTTTGACATCAACTATTGGTGGTGGTGGGGTATCATTTCAAAACAACTCAGTGGATGAAATCCTAGATTTTCAAAATCAAAAGTTGCTGATGAAGGAGATTGCAGCTACTGCAAAGGAAGAACTGGCTAGGCTTATACGGTACAATGAGCCCTTCTGGTTCCTCTCTCCATACCAACAAGGGAAACTCACTCTTCATCTTGGAGACTATGAAGTATTTTTCCCAAAGAATAATCACCTAATTGGTCCCAACGTGCGTATAGAATCATCAAAAGATTCAGTGATAGTGAACATCACAAGCATGCAACTTGTTGAGATGTTTCTAGATCCGGTAAGAACTTGTAACAATATTTTAGAAGTCAAATGGGCCAACCTTTTCCCAACGATTATTGCTAAAGCGGAAACAATCCAAGTCTTTGATAGCGGTTTGTCAAGCAATCTAAATGGAGCCTTGTTGTTGATGTGTGAGGAAATGCATGTTCTTTCACCTTTAGTGCAATCTCGCAAATTTCACTTCCTTCGCTATTGTGAGCGTGTTGATGCTGGTTTATGGATTATAACAGATGTGTCAGTTAATCTCCCTGGACAACACAATGCTCTTTCTCGCTCTTGGAAACATCCCTCTGGATGCATGATTCAGGAAATGCATGATGGGAGATGCATGGTTGTTTGTGTAGAACATGTGGAAGTGGATGAGATTCAAACACACCAACTATTCAAAGATCTGGTTGATACCCAGATTGCATATGGAGCTGAAAGATGGTTGAAAGAGCTGCAAAGAATGTGTGAAAGATTTGCTTGCTTTTTTGATGAAAAAATACCTGTTCATGACCCTAGAGGAGTGATCCATTCAGTTGAAGGGAAGAGAAGCATGATGAAGCTTTCTTATCGAATGGTTAAGATGTTTTGTGAAAGTTTATCCATGTCAGGTCATGATTTGAGCTTCCCACATCCAATTATGGATAATACTAGCGGAGTTAAAATCTCTGTTCGTAGAAACATTGAAATTGGCCACCCAAATGGCGCGGTTGTTGTGGCTGCCACAACTCTTTGGTTTCCACTCCATTATCAGAGAGTTTTTGAGTTTTTAACTGATACAACTAAACGTCCCCAGTGGGATGTTTTTGCTGCTAAAACTCCAGAGCATGAGATTGCACACATTTCAGTCGGAGCTAATCCTGGGAACTATATATCACTCATCCTGCCATTCATGCCAAATACCGAGAACAACAGGGTGACTCTGCAAGAGTGTTCTATGGATCCTATAGGATCATACGTTGTATATGCTCCAATGGATGTAGCTGTTATTGATATGGCCATAGCGGGAGGAGAAACTTCAGTTATACCAATCCTTCCATCAGGTTTTATGATCGCTGCAGATGGCCAAACAAATGCTGAGAGCTCAGGAGGGTCTCTGCTGACTGTGGCATTCCAAATGCTTGTGGGTTGTAGTCTTACTCCAGATGGAACCGAAATACATGATGTGGAAAGTGTGGCAGAAGTCAAGACCCTTTTGGACTTAACAGTCCAGAAAATACAGAATGCTCTGATATGTTATTAA 1929 0.4111 MCYLKTQYVRADNSALRIENERIQKENPVNEALKKIICAFYGSPSFPQEEHELFMQKMRLENAQLKDECKKLNNFLKSLMESQVSQQELQLGLIPIIGSSHDPTLASLLNQEAYGSGVGSSSLGLTSTIGGGGVSFQNNSVDEILDFQNQKLLMKEIAATAKEELARLIRYNEPFWFLSPYQQGKLTLHLGDYEVFFPKNNHLIGPNVRIESSKDSVIVNITSMQLVEMFLDPVRTCNNILEVKWANLFPTIIAKAETIQVFDSGLSSNLNGALLLMCEEMHVLSPLVQSRKFHFLRYCERVDAGLWIITDVSVNLPGQHNALSRSWKHPSGCMIQEMHDGRCMVVCVEHVEVDEIQTHQLFKDLVDTQIAYGAERWLKELQRMCERFACFFDEKIPVHDPRGVIHSVEGKRSMMKLSYRMVKMFCESLSMSGHDLSFPHPIMDNTSGVKISVRRNIEIGHPNGAVVVAATTLWFPLHYQRVFEFLTDTTKRPQWDVFAAKTPEHEIAHISVGANPGNYISLILPFMPNTENNRVTLQECSMDPIGSYVVYAPMDVAVIDMAIAGGETSVIPILPSGFMIAADGQTNAESSGGSLLTVAFQMLVGCSLTPDGTEIHDVESVAEVKTLLDLTVQKIQNALICY* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1888 642 Gene3D - 206 387 IPR023393 -
Lja3g1888 642 Pfam START domain 156 387 IPR002913 GO:0008289
Lja3g1888 642 CDD START_ArGLABRA2_like 151 386 - -
Lja3g1888 642 SMART START_1 156 387 IPR002913 GO:0008289
Lja3g1888 642 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 5 639 - -
Lja3g1888 642 SUPERFAMILY Bet v1-like 409 608 - -
Lja3g1888 642 ProSiteProfiles START domain profile. 147 390 IPR002913 GO:0008289
Lja3g1888 642 SUPERFAMILY Bet v1-like 151 388 - -
Lja3g1888 642 Coils Coil 55 82 - -
Lja3g1888 642 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 639 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1888 Lja-Chr3 21643619 21647835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1888 4 639 Homeobox Transcription Factor Family AT1G73360 40.673 1.54e-138 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1888 K09338 - gmx:100795075 592.038