Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1739 ATGGAGGGGATAGATCCCAATTCATGTGTAAATAGGACAGTTATGGAGAAGAAAACAAGGCCACAAGAGCAAATTAACTGTCCAAGGTGCAATTCAACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAACCTAGATACTTCTGCAAGACATGTAGAAGGTACTGGACAGAAGGTGGGTCTCTCAGAAATGTCCCAGTAGGAGGTGGTTCCAGAAAGAACAAGAAGGTTCTCACCTCATCTGCGGCGGCAGCGGCAGCAGCAGCAGCTTCATCAAAGGCTATTCCAGACCTAAACCCACAACCAACAACCCTCTCATCATCAGTTTCTAATTCCCAAAACCCTAAAATGCATGGAGGCCAAGATCTTAACCTTGCTTTCCCACCTATGGAAAACTATCATCATCATCATGGTATGGTTCCATATGTTGAGATGCACAATGGTGGTGATCACTCTTCTTCTTCTGCTCCAACTAATTCTCTTTCAGCTTTGGAGCTACTAAGGTATAGCATGGCATCAAGGGGCATGAACCCTTATGCTCCTAATAACTCTTTAATGCCAAACACAAATTCCCTATACCCTTCTGGATTTCCCATGCAAGAAGTTAAGCCAAGCCTAGGCTTTTCAGTTGATGGGATTGGGAACAGGTCATATGAACATCAGGTCCAAGAGAGTGGTGGTGGTGGCAGGCTTTTGTTCCCTTTTGGAGATCATGTGAAGCAGCTTTCTGCTGAACAAGTGGAACAGAATAAAGAACAAGGGAATTCAACTGGATATTGGACTGGAATGATGGGTGAAGGCTCATGGTAA 819 0.4457 MEGIDPNSCVNRTVMEKKTRPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVLTSSAAAAAAAAASSKAIPDLNPQPTTLSSSVSNSQNPKMHGGQDLNLAFPPMENYHHHHGMVPYVEMHNGGDHSSSSAPTNSLSALELLRYSMASRGMNPYAPNNSLMPNTNSLYPSGFPMQEVKPSLGFSVDGIGNRSYEHQVQESGGGGRLLFPFGDHVKQLSAEQVEQNKEQGNSTGYWTGMMGEGSW* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1739 272 MobiDBLite consensus disorder prediction 251 272 - -
Lja3g1739 272 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Lja3g1739 272 MobiDBLite consensus disorder prediction 251 266 - -
Lja3g1739 272 MobiDBLite consensus disorder prediction 99 122 - -
Lja3g1739 272 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Lja3g1739 272 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 268 IPR045174 GO:0003700|GO:0006355
Lja3g1739 272 MobiDBLite consensus disorder prediction 95 123 - -
Lja3g1739 272 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Lja3g1739 272 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 12 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1739 Lja-Chr3 19426001 19427854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1739 13 272 C2C2-Dof Transcription Factor Family AT3G61850 49.645 8.63e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g1739 zf-Dof 4.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1739 - - gmx:778110 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1739 3 19426001 19427854 Lja1g4791 1 64879554 64881573 ECH
Lja3g1739 3 19426001 19427854 Lja3g1739 3 19426001 19427854 ECH
Lja3g1739 3 19426001 19427854 Lja1g0068 1 595589 597666 ECH
Lja1g0068 1 595589 597666 Lja3g1739 3 19426001 19427854 PCT