Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1477 ATGCAAGACCCAACAGCAGCATTTCAACAACCCATGAAGCCCCAGTTCCCAGAACAAGAACAACAGCAGCTGAAATGCCCACGTTGTGACTCCATCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGCCATTACTGCAAGAACTGCAAAAGGTACTGGACCAAAGGTGGCTCCCTCAGAAACATCCCAGTTGGTGGTGGCTCCAGAAAGACCACAAAGCGTTCATCATCAACCTCCAAACGTTCTTCTTCATCATCATCTTCCCCTTCACCTTCAATCTCTTCTGCAACAAATCCTGCAGCAACAGTGTCTGAACCGACCCGGGTCCACACTGACCCGGTTGGTGGAGGGAGTTTGAGTTTCAGTTCTCTTCTTGCATCAAATGGGCATTTTGGGAGTCTCTTTGAGGGTATGAATTCAAGCATGTCAGGTTTGAAAATGGTGAAAATGGGTGAGTTTGGGGAGAATGTGATGGGTTCTGACCCGGTTGTGAAGTCGGGTTCGGGTAGTGACCCTGAGTTGGAGATGCAGAGTAATGGGAGCTCAGAATGCTTTCTGGGTATGAGAAATGGTGATTCAAGCTCTTGGAATAATGGTGGTGGTTATGGTTGGTCTGATCTTGCAATGTACACACCTGGCTCCAGCTTTCAGTAG 669 0.4813 MQDPTAAFQQPMKPQFPEQEQQQLKCPRCDSINTKFCYYNNYNLSQPRHYCKNCKRYWTKGGSLRNIPVGGGSRKTTKRSSSTSKRSSSSSSSPSPSISSATNPAATVSEPTRVHTDPVGGGSLSFSSLLASNGHFGSLFEGMNSSMSGLKMVKMGEFGENVMGSDPVVKSGSGSDPELEMQSNGSSECFLGMRNGDSSSWNNGGGYGWSDLAMYTPGSSFQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1477 222 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Lja3g1477 222 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 222 IPR045174 GO:0003700|GO:0006355
Lja3g1477 222 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 7 222 - -
Lja3g1477 222 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Lja3g1477 222 MobiDBLite consensus disorder prediction 176 191 - -
Lja3g1477 222 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Lja3g1477 222 MobiDBLite consensus disorder prediction 73 110 - -
Lja3g1477 222 MobiDBLite consensus disorder prediction 169 191 - -
Lja3g1477 222 MobiDBLite consensus disorder prediction 1 23 - -
Lja3g1477 222 MobiDBLite consensus disorder prediction 65 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1477 Lja-Chr3 15691247 15692368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1477 1 140 C2C2-Dof Transcription Factor Family AT1G51700 53.125 3.55e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g1477 zf-Dof 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1477 - - qlo:115988764 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1477 3 15691247 15692368 Lja3g1477 3 15691247 15692368 ECH
Lja3g5056 3 92722466 92724376 Lja3g1477 3 15691247 15692368 PCT