Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0794 ATGGATTCTTCCAGTGAACAACATCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCTTGCTCAAAAGCACAAGAACAGGACAAGAAGCCAAGGCCTCAGCCAGAGCTTGCTCTGAAATGCCCCAGATGTGACTCCAGCAACACCAAATTCTGTTACTACAACAACTACAGCCTCTCCCAGCCTAGATACTTCTGCAAGTCTTGCAGGAGATACTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGTGGAGGGTGCAGGAAGAACAAGAGATCATCATCAGCATCAAGGAGGGTTCAAGATCAAACCTTCAACCCCAATCCCAACCCTCTCTCTGGTTTCTCTCAAATGTCTTATGACTCCAGTGACCTCACTCTTGCATTAGCTAGGCTCCAAAAGGGGCAAATGGGTAACTTTGATGAACATGATTTCTCAATTTTGGGGAGTGATAACATTCTTGGAAATCATGCCATGAACAACAACCCCTCTCCCACCAACAACCATGGATTCTTAGATTCACTTAGAAGTGGGTTCCTTGGAACAAACAATAACAATGTGCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGAAAATGGGGTTGGGGTAAGTGGAGATATGATGCTGCCTTATGATCAAGAATTGAGTAGCACCATTGCTACCACTCAAGCAGTGACAGTTACAACCATGAAACAAGAACTGTGTAGTGGAAGGGAACAAAATGAAAGCAAGGTTTTGTGGGGATTCCCATGGCAGCTGAACAATGGAGATCACACACACATGGGTGGTGAGCTTGATTCAGGAAGAGCTAATTGGAATGGTCTCACCCCATCTTGGCATGGGCTTCTCAATAGTCCTCTCATGTAG 888 0.4583 MDSSSEQHQQMSSQSLENMLACSKAQEQDKKPRPQPELALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSASRRVQDQTFNPNPNPLSGFSQMSYDSSDLTLALARLQKGQMGNFDEHDFSILGSDNILGNHAMNNNPSPTNNHGFLDSLRSGFLGTNNNNVQNLYYGYGNGDMGEVENGVGVSGDMMLPYDQELSSTIATTQAVTVTTMKQELCSGREQNESKVLWGFPWQLNNGDHTHMGGELDSGRANWNGLTPSWHGLLNSPLM* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0794 295 MobiDBLite consensus disorder prediction 1 40 - -
Lja3g0794 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 294 IPR045174 GO:0003700|GO:0006355
Lja3g0794 295 MobiDBLite consensus disorder prediction 99 116 - -
Lja3g0794 295 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g0794 295 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
Lja3g0794 295 MobiDBLite consensus disorder prediction 85 116 - -
Lja3g0794 295 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Lja3g0794 295 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Lja3g0794 295 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0794 Lja-Chr3 8045834 8047968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0794 39 295 C2C2-Dof Transcription Factor Family AT2G28510 42.963 1.59e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g0794 zf-Dof 7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0794 - - gmx:100799737 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0794 3 8045834 8047968 Lja3g0794 3 8045834 8047968 ECH