Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0724 ATGGTTTTCTCTTCTATTCCAGTCTATGTAGATCCTCCCAATTGGCACCAGCAACAACCAAATCATCAGCATCAGCATCAGCATCAACATCATCACCAACTAAATGGCAGTGACAACACTCACCTGCTTCCACCTCTGCCCCCTCTGGCGGCAGAGATGGCTGGTGGTGGTGGTGGTTCTATGGGCTCGATCAGGCCAGGTTCCATGGCTGATCGAGCTCGGTTAGCTAAGATTCCACCACCTGAACCAGCTCTCAAGTGTCCTCGTTGTAATTCCACCAACACCAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAACCTCGCCACTTTTGCAAGGCTTGTAGGCGTTACTGGACAAGTGGGGGTGCTCTCAGAAACGTTCCTGTAGGTGGAGGGTGCCGCCGGAACAAGAAGAGCAAGAGAAGCCGCTCCAAATCTCCTTCAAGTTCTGAGAAACAAACACCATCGTCAAGTGCAAACAACAACAATAGCATCCCCTCCACACATGAGATGCTTGGTCAGTTGCCACCACAACCACCTACTCTACCCTTCATGGCTTCTCTGCAGAATCTTAGCCGGTATGGTGTTGGAAACATGGGTCTCAGAATGGGTGAGAATATTCATCAAGGACAGAATGATCACATGGGGTTTCAAATTGGTGGTGTTGGTAACTCAGTTTCTGGCGGTGGAGTGGAACAGTGGCGGTTGCAGCAGTTTCCTTTCTTGAATGGTTTTGAATCAACTACTTCACCTGGTTCTAATTATCCTTTTCAAAGTGAAGGTAATATTGATGGAGCTTCTGATTTTGTTGGAGATTTAGCTTCAAGTTCTAGGGTTACTCAGGTTCCACCTGTTAAAATGGAAGATAATGGAGGTCTCAATTTGTCAAGATCATCTCTGAATAATGTCTCAGAAAATAACCAGTACTTTTCATGGACTGATATGTCAGGTCTTGCCTCTTCTTCCACTACTAGTCATCTCTTATAA 990 0.4616 MVFSSIPVYVDPPNWHQQQPNHQHQHQHQHHHQLNGSDNTHLLPPLPPLAAEMAGGGGGSMGSIRPGSMADRARLAKIPPPEPALKCPRCNSTNTKFCYFNNYSLSQPRHFCKACRRYWTSGGALRNVPVGGGCRRNKKSKRSRSKSPSSSEKQTPSSSANNNNSIPSTHEMLGQLPPQPPTLPFMASLQNLSRYGVGNMGLRMGENIHQGQNDHMGFQIGGVGNSVSGGGVEQWRLQQFPFLNGFESTTSPGSNYPFQSEGNIDGASDFVGDLASSSRVTQVPPVKMEDNGGLNLSRSSLNNVSENNQYFSWTDMSGLASSSTTSHLL* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0724 329 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Lja3g0724 329 MobiDBLite consensus disorder prediction 11 67 - -
Lja3g0724 329 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Lja3g0724 329 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 325 - -
Lja3g0724 329 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Lja3g0724 329 MobiDBLite consensus disorder prediction 149 172 - -
Lja3g0724 329 MobiDBLite consensus disorder prediction 129 185 - -
Lja3g0724 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 325 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0724 Lja-Chr3 7316291 7318213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0724 28 328 C2C2-Dof Transcription Factor Family AT3G55370 39.458 7.90e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja3g0724 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0724 - - gmx:100816635 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0724 3 7316291 7318213 Lja3g0724 3 7316291 7318213 ECH
Lja3g2782 3 41874907 41876294 Lja3g0724 3 7316291 7318213 PCT