Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0276 ATGAATTCTTTTAACTCTCAGGTGGCGGATGAACAACTTTCGAGGTATGTTCAAACTTCCAATGAAAGAAAGAACGCTTCAAGGGGAAAGTTTCTTGCTTCCATTGGAGTACATGAGATTTTCAGATCAGAGACATGGAAAGCAGCCATGACCGAGTTGGCAGCTACTGCATCTCTAGTATTCACCTTGACAACTTCCATCATTGCATGCTTGGACTCACATGAAACAGACCCTAAACTCCTTGTTCCGTTTGTAGTGTTTATCATAGCCTTCCTATTCCTAATTGTGACAGTTCCCTTATCAGGGGGCCACATGAGCCCTGTTTTCACAATCATCGCTGCTCTAAAAGGTGTTGTGACTCTAACTCGCGCCCTCATTTATATGTTCGCACAATGCGTGGGCTCGATAATTGGTTTCTTTGTACTCAAGTGTGTGATGGATCCAAAATTGGTACACACATATTCCTTAGGAGGCTGTACAATTGGTGGCAATGGGGTAAATTCTGCAATAACAGAGTATGATGCTTTGTTGTTGGAAATTTCTTGCACATTTCTGGTGCTGTTTTTGGGTGTAACTTTGGCATTTGACAAGAAAAGGGCCAAGGAATTGGGCTTGCCAATGGTGTGCATGGTGGTAGCCGGAGCCATGGCGCTCGCCGTGTTTGTGTCCATAACTGTGACCGGAAGGCCCGGTTATGCGGGTGTGGGCCTGAACCCAGCAAGGTGCCTAGGCCCAGCACTGCTTCAGGGAGGCTCAGTGTGGAATGGACATTGGGTTTTTTGGGTTGGGTCTTTCTTGGCCTGCATAATATACTATGTTGTCTCTGTCAACTTGCCAAAGGAGGGTTCAGGAATTGGGGATGGAGAATTTGATGTAGTAAAGTTGCCTCAAGCTTCTTGA 900 0.4578 MNSFNSQVADEQLSRYVQTSNERKNASRGKFLASIGVHEIFRSETWKAAMTELAATASLVFTLTTSIIACLDSHETDPKLLVPFVVFIIAFLFLIVTVPLSGGHMSPVFTIIAALKGVVTLTRALIYMFAQCVGSIIGFFVLKCVMDPKLVHTYSLGGCTIGGNGVNSAITEYDALLLEISCTFLVLFLGVTLAFDKKRAKELGLPMVCMVVAGAMALAVFVSITVTGRPGYAGVGLNPARCLGPALLQGGSVWNGHWVFWVGSFLACIIYYVVSVNLPKEGSGIGDGEFDVVKLPQAS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0276 299 PRINTS Major intrinsic protein family signature 47 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0276 299 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0276 299 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0276 299 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0276 299 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0276 299 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0276 299 SUPERFAMILY Aquaporin-like 44 272 IPR023271 -
Lja3g0276 299 PANTHER AQUAPORIN-LIKE 19 298 - -
Lja3g0276 299 Pfam Major intrinsic protein 42 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0276 299 Gene3D Glycerol uptake facilitator protein. 32 281 IPR023271 -
Lja3g0276 299 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 19 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0276 Lja-Chr3 2782831 2785526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0276 100 283 Major Intrinsic Protein MIP AT1G17810 33.508 4.04e-22 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0276 K09866 - gmx:100804160 426.787