Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3251 ATGACCAAATCCAACACTTTCTTTCAAAATCTCATAAAACCCTTCAAATTGGGTTCCAGTAGTGAAGCACAGAACGAAGACGACATACAGAACATCGCTGCAAAGGAACACAAGACCTTTTCGTATGAAACATTGGTCGCTGCTACCAAGAACTTTCACGCTGTCAACAAGCTCGGTGAGGGAGGATTTGGACCCGTCTTCAAGGGGAAATTGAATGATGGGAGAGAGATTGCGGTGAAGAAGTTATCGCGTCGTTCAAATCAAGGGAGGACACAATTCATTAACGAGGCCAAGTTGTTGACACGTGTGCAGCACCGTAATGTGGTGAGTTTATTTGGCTATTGTGCCCATGGCTCAGAGAAGCTTCTTGTTTACGAGTATGTCCCTCGTGAGAGCCTTGACAAGCTTCTATTCAGATCCCAAAAGAAAGAGCAGTTAGATTGGAAACGTAGATTTGACATAATCAGTGGCGTGGCAAGAGGGTTGCTTTATCTCCACGAAGACTCACACGATTGCATTATCCATCGAGACATAAAAGCTGCAAACATCTTACTCGATGAAAAATGGGTACCCAAGATTGCAGATTTTGGTTTGGCACGCATCTTCCCAGAAGACCAAACCCATGTCAATACACGTGTGGCTGGAACCAATGGGTATATGGCTCCAGAGTACTTGATGCATGGACATCTAAGTGAGAAGGCAGACGTATTTAGCTATGGAGTTGTAATGATGGAGTTGATCACTGGCCATCGAAACTCATCGTTTGATTTGGATGCCAATGGCCTCCTCGACTGGGCATACAAGCTATACAAGAAAGGGAGGGCGTTAGAAATTGTGGATCCCGTGCTGGCATCCTCTGCGGTTACAGAGCAGGTTGAAGTGTGCATTCAGCTAGCTCTGCTCTGCACGCAAGGCGATCTGCATCTACGGCCAACGATGGGGCGTGTGGTGGTGATGCTGTCGAAGAAGCCGAGTCACATGCAAGAACCAACAAGACCAGGAATGCCTGGTTCCAGATATAGAAGATTACCTCGCAGGTTTCATGCTTTCTCTTCTTCCACGGCTGATGGTGATGAGTCTGATTCTCACGGTACTTTTGATTCAAGCAACCATGGCACTACTATTTCTACAACAAAAACAAGCTCAATTGCTGCAGAAGTAGACTCGCGAGGAAAACGTCCAATGCAAGATAGATTTGATTCAACTCATTCAAGCAATTATGGCACTACTACATCTACAAGTGGAACGCTCGACAACCATAGAAAACTAGACTCGCGAGGGAAAGGTCCATTGCAAGGTTAG 1302 0.4585 MTKSNTFFQNLIKPFKLGSSSEAQNEDDIQNIAAKEHKTFSYETLVAATKNFHAVNKLGEGGFGPVFKGKLNDGREIAVKKLSRRSNQGRTQFINEAKLLTRVQHRNVVSLFGYCAHGSEKLLVYEYVPRESLDKLLFRSQKKEQLDWKRRFDIISGVARGLLYLHEDSHDCIIHRDIKAANILLDEKWVPKIADFGLARIFPEDQTHVNTRVAGTNGYMAPEYLMHGHLSEKADVFSYGVVMMELITGHRNSSFDLDANGLLDWAYKLYKKGRALEIVDPVLASSAVTEQVEVCIQLALLCTQGDLHLRPTMGRVVVMLSKKPSHMQEPTRPGMPGSRYRRLPRRFHAFSSSTADGDESDSHGTFDSSNHGTTISTTKTSSIAAEVDSRGKRPMQDRFDSTHSSNYGTTTSTSGTLDNHRKLDSRGKGPLQG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3251 433 PANTHER RECEPTOR-LIKE KINASE 3 373 - -
Lja2g3251 433 MobiDBLite consensus disorder prediction 366 385 - -
Lja2g3251 433 CDD STKc_IRAK 58 322 - -
Lja2g3251 433 ProSiteProfiles Protein kinase domain profile. 52 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3251 433 MobiDBLite consensus disorder prediction 400 418 - -
Lja2g3251 433 SMART serkin_6 52 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3251 433 Gene3D Transferase(Phosphotransferase) domain 1 128 332 - -
Lja2g3251 433 Pfam Protein kinase domain 52 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g3251 433 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Lja2g3251 433 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 373 - -
Lja2g3251 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Lja2g3251 433 MobiDBLite consensus disorder prediction 351 433 - -
Lja2g3251 433 SUPERFAMILY Protein kinase-like (PK-like) 37 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3251 Lja-Chr2 71705509 71712727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3251 20 335 Receptor kinase-like Gene Family AT4G11530 48.750 1.52e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja2g3251 Pkinase 3e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3251 2 71705509 71712727 Lja2g3251 2 71705509 71712727 ECH