Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3238 ATGGATAGTATTCTGGGTCTTCTCAAGCTTCGAATTAAAAGAGGTATTAACCTTGCAATTCGTGATGCTCGTTCCAGCGATCCTTATGTTGTTATCAATATGGGAGAACAGAAGCTGAAGACCCGTGTGATAAAAGCAAATTGCAATCCTGAGTGGAATGAAGAATTGACCCTTTCTATAAGGGATGTTAAAACTCCAATACACTTGACAGTTTATGACAAGGATACTTTCTCAGTGGATGACAAAATGGGTGATGCAGAGATAGACCTGAAACCATATTTTCAGTGTCTGAAGATGGGAATGAAAAAGCTCCCAAATGGGTGTGCACTCAAGAGGATTCAGCCAAGCAGGTCTAACTGCCTTGCTGAAGAGAGTAGCTGCATTTGGCAAAATGGGAAAATAATCCAGCCAATGATTTTAAGATTGAGAAATGTTGAGAGTGGTGAATTAGTTGTGGAATTGGAGTGGGTTGATGTTACAGGTTGCAAGGGCTTATCAGAGAGTGCAAGGACCAAATCTTCAAATACTTCTTAG 534 0.4045 MDSILGLLKLRIKRGINLAIRDARSSDPYVVINMGEQKLKTRVIKANCNPEWNEELTLSIRDVKTPIHLTVYDKDTFSVDDKMGDAEIDLKPYFQCLKMGMKKLPNGCALKRIQPSRSNCLAEESSCIWQNGKIIQPMILRLRNVESGELVVELEWVDVTGCKGLSESARTKSSNTS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3238 177 CDD C2_ArfGAP 5 148 - -
Lja2g3238 177 Gene3D C2 domain 4 176 IPR035892 -
Lja2g3238 177 SMART C2_3c 7 102 IPR000008 -
Lja2g3238 177 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 91 IPR035892 -
Lja2g3238 177 Pfam C2 domain 7 92 IPR000008 -
Lja2g3238 177 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 1 164 - -
Lja2g3238 177 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Lja2g3238 177 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 164 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3238 Lja-Chr2 71516425 71519276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3238 38 173 C2H2 Transcription Factor Family AT1G70790 64.493 2.11e-61 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3238 2 71516425 71519276 Lja2g3238 2 71516425 71519276 ECH
Lja2g3238 2 71516425 71519276 Lja2g2191 2 24937981 24940951 ECH
Lja2g3238 2 71516425 71519276 Lja2g1832 2 18873172 18875989 ECH