Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3231 ATGAGAACCATTACAAACAAGTCTCAGCTCCTTACCGACCAACCACATCTTACATGCTGGTTCATAAACACAAGACGCGAAATCCATAGGATCCACCCTACCAGACGCAGTGCCAGACATATCCGATGCAACTATGGCATCAGAACCAACCTGAAGCACAATCTTAACCCAAATTCTTCACAAAAACTACTTTTTAACCCAAATTCGGTTTTCATTGAAAGTGATCTTAATGAAAATCCCCAGACACCGATAACCTCCACCCAACACCATACACCATTATTTCCCTCTCACCGTTCCGACACCCACGTAGCTGCCGCAGCACTTTCGACGCAGACAACGTTGCAAATTGCAATGTGGCCTCTTCAGTCTTTTCAGTGTTTCAGTTGCAAGCAACTCAGAAATGTTGTGGTCTTTCAAGGCAAGGGAAGTTGTTATTCAACCTTTTTCAGTAGGAGGATGAGGTGTGGTAATTTTCTCCCTTTGAAATATTCAAAATGGTGTTACCGGATGAAACACAAGTTTCCAGAGAAGAAGGTTGTGGAAATGGAACCGTGTGGTGGAAGGGGGAGCAGTTTAAAGTTGCGTAATCAGGTATTTGCTCTCTTGGATTATAACAAAATGAGTCTGAAAGATGTATTAGATGATTCAGACATCTCCTTGATATGTAAGACATTTCCATCAATTACTTTGGGTAATGCTCCTAAAGTGGATTTGTACGATGGGACTGAATTGGAATCTGAAACCACAAACAGTTCAGCAACAGAAGATTCAGAACAGTGTTTTTCAGATTCTTCAGAGGCAAGGTGGGTGCAAAATACTCTCCCTGAAGCTCAGTCTCCGGTGTATGTTGATCATTCTAGTGTATTATCTTCCTCGTTACAAAAAGATGGCTCTTGTCCTTTAATACCTCAGCCAATGTCTTCAATATGTGAAGAAAATTTGGATCGAGTTATTAAGGAGGTTTCTCAAGAGAAACTGGGGCTGCAGTCACAATCAAATGTAACACCTAATGACTTATTTCTTGACGAATCTATAAGTTGCTTCCCTGGATTAAGTAAGAGGCACTGCCGACAGCTAGATGACTGTGGGTTTCACACGTTTCGGAAATTGCTGCATCATTTTCCGCGATCATATGCTAATCTTCAGAATGCGCATGCTAAAATTGACGATGGGCAGTATTTGATTTTTGTTGGAAAAGTCTTATCTTCAAGGGGAGTCAAAGCTAATTGTTCATTTTCATTTCTTGAGGTGATTGTGGGTTGTCAGATTACAGACAGTGAATCAGCTTCAGGGCATGTGACAGGCAATGCTATTGATGGGCAAGAGAAAACAATTTATTTGCATTTGAAGAAATTTTTTCGTGGCTCACGTTTTACGTTTAAACCTTTTCTTAGTAGTATTGCAAATAAGTATCGAGAGGGAGACATAGCATGTGTGAGTGGCAAGGTCAGGACTATGCGTGCTGAAGATCACTATGAGATGAGAGAATATAATATTGATGTGCTTGAAGATGGAAAAGAATTATCATTTTGTGCTAAAGAGCGGCCATATCCTATCTACCCTTCAAAAGGGGGACTGAACCCAACTTTTCTGAGGGACATTATTGCAAGAGCTTTACAAGCCTTGGCTGTCAATATTGATCCAATTCCTAAAGATATCACAGAGCAATTTGGACTGTTAAGTCTTCGTGATGCATACTTTGGAATTCACAAACCGAAGGATATAAATGAAGCTGATTTGGCCCGCAAGAGAATTATATTTGATGAATTTTTTTACCTCCAGTTAGGACGCTTATTCCAAATGCTTGAAGGTCTTGGTACACAAATAGAGAAGGATGGATTGCTAGATAAGTATAGAAGACCAGAAAATAATGCTGTGTGTACAGAGGAATGGTCCTGTCTCACCAAGAAAGTTTTGGAGCTCCTTCCATACACTCTTACTTCTAGTCAACTGCAAGCTGTTTCAGAAATTATTTGGGATTTGAAAAGGCCAGTTCCTATGAATCGGTTACTGCAGGGTGATGTTGGATGCGGGAAAACTGTTGTAGCTTTTCTGGCATGCATGGAGGTTCTCGGATCTGGCTATCAGGCTGCTTTCATGGTTCCAACTGAGTTGCTTGCAATCCAACATTATGAACATTTGCTTAATTTGCTTGAAAACTTGGATGAGGTCGAGTTCAAGCCAACTGTCGCTTTACTTACTGGTTCAACTCCACTAAAACAATCGCGGATTATTCGTAAGGGTATCCAGACTGGAGAAATTTCAATGGTCATAGGAACCCATAGTTTGATAGCAGAAAGTGTGGAATTTTTAGCCTTACGCATTGCTGTGGTGGATGAGCAGCATCGCTTTGGTGTGATTCAAAGAGGAAGATTTAACAGTAAGTTATTTTGTACTTCTTCAATTTCCAGTGTGGAAGATGCCGTTACAGATAGGCCCTCAAGGAATGATGCATATATGGCTCCACATGTTCTTGCTATGTCTGCTACTCCCATCCCAAGGACACTTGCACTTGCTTTATATGGGGATATGTCACTGACACAGATAACTGACTTACCTCCAGGAAGAATTCCTGTTCAAACATATACCATTGAAGGAAATGACAAAGGATTCGAGGATGTCTACAAGATGATGATGAATGAGTTGGAAGACGGGGGAAAAGTTTATCTTGTCTACCCAATTATTGAACTCTCTGAGCAGTTGCCTCAGCTTCGTGCTGCTTCTGCAGATTTTGAAGCTATGTCAAACCGGTTTCATGGATACAATTGTGGTTTACTACATGGAAAAATGAAAAGTGATGAAAAAGAAGAAACGTTAAAAAAGTTTAGGACTGGAGAAATGCATATACTACTTGCCACACAAGTAATTGAAATTGGTGTTGACGTTCCAGACGCATCTATGATGGTTGTGTTGAATTCTGAGAGGTTTGGAATTGCCCAATTACACCAACTCAGGGGACGAGTTGGTCGCGGAACACGGCAGTCAAAATGTATACTAGTAGCGTCGACTGCAAGTAGCCTAAATCGTTTGAAAGTACTGGAGCAATCATCAGATGGGTTCCATCTTGCTAATATGGACCTTTTATTGCGTGGACCTGGTGACTTGCTTGGGAAGAAACAATCTGGACATCTTCCTGAGTTTCCTATTACCCGATTGGAAGTTGATGGAAATATTTTACAAGAAGCACACGTTGCGGCACTGAAAATTTTAAGTGCTTCCCATGATTTGGAGCGATTTCCTGCACTTAAACGGGAGCTTAGCATGAGACAGCCACTTTGCTTGCTAGGTGATTGA 3294 0.4104 MRTITNKSQLLTDQPHLTCWFINTRREIHRIHPTRRSARHIRCNYGIRTNLKHNLNPNSSQKLLFNPNSVFIESDLNENPQTPITSTQHHTPLFPSHRSDTHVAAAALSTQTTLQIAMWPLQSFQCFSCKQLRNVVVFQGKGSCYSTFFSRRMRCGNFLPLKYSKWCYRMKHKFPEKKVVEMEPCGGRGSSLKLRNQVFALLDYNKMSLKDVLDDSDISLICKTFPSITLGNAPKVDLYDGTELESETTNSSATEDSEQCFSDSSEARWVQNTLPEAQSPVYVDHSSVLSSSLQKDGSCPLIPQPMSSICEENLDRVIKEVSQEKLGLQSQSNVTPNDLFLDESISCFPGLSKRHCRQLDDCGFHTFRKLLHHFPRSYANLQNAHAKIDDGQYLIFVGKVLSSRGVKANCSFSFLEVIVGCQITDSESASGHVTGNAIDGQEKTIYLHLKKFFRGSRFTFKPFLSSIANKYREGDIACVSGKVRTMRAEDHYEMREYNIDVLEDGKELSFCAKERPYPIYPSKGGLNPTFLRDIIARALQALAVNIDPIPKDITEQFGLLSLRDAYFGIHKPKDINEADLARKRIIFDEFFYLQLGRLFQMLEGLGTQIEKDGLLDKYRRPENNAVCTEEWSCLTKKVLELLPYTLTSSQLQAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVLGSGYQAAFMVPTELLAIQHYEHLLNLLENLDEVEFKPTVALLTGSTPLKQSRIIRKGIQTGEISMVIGTHSLIAESVEFLALRIAVVDEQHRFGVIQRGRFNSKLFCTSSISSVEDAVTDRPSRNDAYMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVQTYTIEGNDKGFEDVYKMMMNELEDGGKVYLVYPIIELSEQLPQLRAASADFEAMSNRFHGYNCGLLHGKMKSDEKEETLKKFRTGEMHILLATQVIEIGVDVPDASMMVVLNSERFGIAQLHQLRGRVGRGTRQSKCILVASTASSLNRLKVLEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRLEVDGNILQEAHVAALKILSASHDLERFPALKRELSMRQPLCLLGD* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3231 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 1046 IPR027417 -
Lja2g3231 1097 Gene3D - 603 850 IPR027417 -
Lja2g3231 1097 TIGRFAM recG: ATP-dependent DNA helicase RecG 362 1065 IPR004609 GO:0003678|GO:0006281|GO:0006310
Lja2g3231 1097 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 660 849 IPR014001 -
Lja2g3231 1097 CDD DEXHc_RecG 585 853 - -
Lja2g3231 1097 SMART helicmild6 895 992 IPR001650 -
Lja2g3231 1097 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 1017 1075 IPR045562 -
Lja2g3231 1097 SMART ultradead3 642 860 IPR014001 -
Lja2g3231 1097 Pfam Helicase conserved C-terminal domain 876 991 IPR001650 -
Lja2g3231 1097 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 125 1097 - -
Lja2g3231 1097 Pfam DEAD/DEAH box helicase 667 834 IPR011545 GO:0003676|GO:0005524
Lja2g3231 1097 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 125 1097 - -
Lja2g3231 1097 SUPERFAMILY Nucleic acid-binding proteins 340 543 IPR012340 -
Lja2g3231 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 853 IPR027417 -
Lja2g3231 1097 Gene3D - 859 1030 IPR027417 -
Lja2g3231 1097 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 873 1028 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3231 Lja-Chr2 70968797 71014737 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3231 2 70968797 71014737 Lja2g3231 2 70968797 71014737 ECH