Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2993 ATGAGTGGTGAAGGGAACATGTGTGGTAAGGATCCGGGTTTCATGCTTTTTGGTAGGAGGATTCCAGTGCCGGAATATCAGATTCCGGCGAGCTCTCAAATGGGTTGTCAGATTCAATCCAATTCTGCAATCATGAAAACAGAAGCTGAAATGCCACATACTGCAAACTCTGAGCAACCAGAAAATTCTTCTTCTGATTTAAGGGATAGCAGAGAAGAGTCCCTGCATCAGGAAAATCGATCGAAACTGAACACCAAGCCTGTGGAAGACAGTACGGAGACTAGCAGTGCAGATCAAGCTAAAGCTCTTAAGAAACCGGACAAGATTATTCGCTGTCCACGATGCAACAGTTTGGAGACTAAATTTTGTTATTTCAATAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACCGCCGGTGGAGCGACAAGAAATGTTCCGGTCGGTGCCGGGAGAAGGAAGAACAAACACGTAGCTTCTCAGTACCAGCAAATTATTGTATCCTCTGAGGGAATTCCAACCACCAAAGACTCTTCTAGGCACCAAGTTTTCTCTGCTCTTGAATCTTCTGCGGTTTTAAGGTCTTCCACGGACAACTGTACCGTGTTAAAATTCGGTGTAGATGGTTCTCTCAGTGAATCTATGGATTCAATGCTTAATCTTAGAAACCAGAAAAGAAGTTTTGATGCAAGCGCTTCTTTCAAATCTTTAGAGAATGGGGAGGATGAGGTCTCCTTATGTGGATCTTCGGTGACGATGAATGCTTTTACTCAGGGAAATGAACTGTCGGAACATATCACACCAAAACCTTTGCAGTGTTACCCTGTTCCTCCATGGGTGCAACCTTTGAATCCAGGTAGGAACATGTGTAACCCTTATAGCACCGATCTCACGGCAGTGAATTGGTGTCCCGCAGCGTCAATGGTGGCGTTTCCCTCAATTTGCCCCCCAAGCATTCCCATGCAATTTGTTCATGGACCATTCTGGAATGGAACATCTTTATGGGCTTCTGGAAATGGAACAGTATCAATAGGTTCAAATGGTTGCCTTTCACCTTCTTCCTCTACTAGTAACAGCTGCTGCTCAGGCAATCGCTCGCCAACCCTTGGCAAACACACTAGAGATGCAGCTTTCACAGATGAAGTGAAATCAGAAATGTGTGTTCTGGTTCCTAAGTCCCTAAGAATTGATGATCCAAATGAAGCCTCAAAAAGTATTAGAATCTAA 1248 0.4423 MSGEGNMCGKDPGFMLFGRRIPVPEYQIPASSQMGCQIQSNSAIMKTEAEMPHTANSEQPENSSSDLRDSREESLHQENRSKLNTKPVEDSTETSSADQAKALKKPDKIIRCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGATRNVPVGAGRRKNKHVASQYQQIIVSSEGIPTTKDSSRHQVFSALESSAVLRSSTDNCTVLKFGVDGSLSESMDSMLNLRNQKRSFDASASFKSLENGEDEVSLCGSSVTMNAFTQGNELSEHITPKPLQCYPVPPWVQPLNPGRNMCNPYSTDLTAVNWCPAASMVAFPSICPPSIPMQFVHGPFWNGTSLWASGNGTVSIGSNGCLSPSSSTSNSCCSGNRSPTLGKHTRDAAFTDEVKSEMCVLVPKSLRIDDPNEASKSIRI* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2993 415 MobiDBLite consensus disorder prediction 32 63 - -
Lja2g2993 415 MobiDBLite consensus disorder prediction 32 103 - -
Lja2g2993 415 MobiDBLite consensus disorder prediction 64 87 - -
Lja2g2993 415 Pfam Dof domain, zinc finger 108 164 IPR003851 GO:0003677|GO:0006355
Lja2g2993 415 ProSitePatterns Zinc finger Dof-type signature. 112 148 IPR003851 GO:0003677|GO:0006355
Lja2g2993 415 PANTHER CYCLIC DOF FACTOR 3-LIKE 9 412 - -
Lja2g2993 415 ProSiteProfiles Zinc finger Dof-type profile. 110 164 IPR003851 GO:0003677|GO:0006355
Lja2g2993 415 PANTHER CYCLIC DOF FACTOR 2 9 412 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2993 Lja-Chr2 57566513 57569338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2993 11 412 C2C2-Dof Transcription Factor Family AT5G39660 34.423 1.67e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja2g2993 zf-Dof 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2993 - - ccaj:109792807 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2993 2 57566513 57569338 Lja2g2993 2 57566513 57569338 ECH