Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2162 ATGGCCATATGGAGAAAGGGAATTGCAGATGAAATAAAGAAGCAGCTATGGCTTGCAGGGCCAATGGTATTTGTGTGTGTGTTTCAAAACAGTTTGCAGATGATCTCTCTCATGTTTGTTGGGCATTTGGACGAGTTGCATCTAGCTGGTGCTTCTTTGGCCTCTACATTTGTGAATGTAACCGGTTTCAATGTATTGTTGGGGTTGTCAAGTGCGCTAGACACATTTTGCGGTCAAGCATATGGAGCACAACAATATCACAAGGTTGGCATATACACACAAAGAGCCATGTTTGTCACACTCCTTGTCACTATTCCTCAATCTTTTATTTGGGCTTACATAAAGCCCATTTTGATTCTTCTTCATCAAGACAAAAATATTGCAGCACAAGCTCAACTATTTGCTCGTTACATGATCCCAAGCCTTTCTGCCAATGGCCTTCTTCGCTGCCTTGTTAAATTCCTACAAACCCAAAACATAGTGTTCCCCATGGTGCTATCTACTGGATTTACTAGCTTAGCACATGTCCTTCTCTGCTGGACTTTTGTAATCAAACTTGGGCTTGGCATTAAAGGAGCTGCCATTGCAACTTGCATCTCAAATTGGCTTAGCATGGTCATGCTAGCACTTTATGTATGGTTCTCCCCTTCTTGCAAAAAGACTTGGGTTGGTTTCTCATGGGAATGCTTTCATGACATCCCTCATTTTCTCAGACTAGCTTTTCCTTCAGCAGTCATGGTCTGCTTAGAATCATGGACGTTTGAACTCTTAGTGCTCCTAGCTGGTGCTCTTCCCAATCCAAAGCAGCAAACTTCAGTGCTTTCGATAAGCATTACTACAACCGGGACAATTTGGATGATACCATTTGGAATCAGTGCTGCTGGAAGCACAAGAATCTCAAATGAACTAGGGGCTGGTTCTCCAAAAAATGCACATTTAGCTGTTAAAGTCCTCTTGTTGATGGCCTTCACGGCGGGAATTATAGAATCAGCTTTTTTCATGGCGGTGTGGAAAGTTTGGCCTCGTGCTTTTACCAATGTACATGAAGTGGCCACTTATTTGACTTCCTTGACTCCAATTGTTGCAACCTCTGTCTTTGTGGATTCAATTCAAACAGCACTCCAAGGTGTGGCAAGAGGATGTGGTTGGCAGAAGCTTGGTGCATTTGTTAATCTTGGGTCTTATTATTTTGTTGGTGTTCCATTTGCAGTTGTGTTTGCTTTTGTCCTCCATATGAAGGGAAAGGGGCTAGTTTTAGGCATTGTATTAGCACTTATTGTGCAAGTTGTGGTGTTTTTTCTCATCACCTTACGCACCAATTGGGAGAAAGAAGCCAAGAAAGCAGCAATAAGAGTAGGAGACAATGAAGTCCAAATGAATGCACTTCCGGGTGACCAAAACGTTACTCCTCCAGCCTAA 1419 0.4271 MAIWRKGIADEIKKQLWLAGPMVFVCVFQNSLQMISLMFVGHLDELHLAGASLASTFVNVTGFNVLLGLSSALDTFCGQAYGAQQYHKVGIYTQRAMFVTLLVTIPQSFIWAYIKPILILLHQDKNIAAQAQLFARYMIPSLSANGLLRCLVKFLQTQNIVFPMVLSTGFTSLAHVLLCWTFVIKLGLGIKGAAIATCISNWLSMVMLALYVWFSPSCKKTWVGFSWECFHDIPHFLRLAFPSAVMVCLESWTFELLVLLAGALPNPKQQTSVLSISITTTGTIWMIPFGISAAGSTRISNELGAGSPKNAHLAVKVLLLMAFTAGIIESAFFMAVWKVWPRAFTNVHEVATYLTSLTPIVATSVFVDSIQTALQGVARGCGWQKLGAFVNLGSYYFVGVPFAVVFAFVLHMKGKGLVLGIVLALIVQVVVFFLITLRTNWEKEAKKAAIRVGDNEVQMNALPGDQNVTPPA* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2162 472 CDD MATE_eukaryotic 11 447 IPR045069 GO:0042910|GO:1990961
Lja2g2162 472 PANTHER PROTEIN DETOXIFICATION 2 452 - -
Lja2g2162 472 PANTHER MULTIDRUG RESISTANCE PROTEIN 2 452 - -
Lja2g2162 472 TIGRFAM matE: MATE efflux family protein 21 417 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2162 472 Pfam MatE 21 181 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2162 472 Pfam MatE 242 405 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2162 Lja-Chr2 24442897 24446697 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2162 2 24442897 24446697 Lja4g0047 4 391471 395732 PCT