Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2160 ATGTCAAGGGCAACAGAAAGAACAGAAGTTCTTGAAGAAGTGAAGAAACAGTTATGGCTAGCAGGACCTTTAATAGCTGTGGGCCTCCTAAATTATTTCCTAAATGTTATATCTGTCATGTTTGTTGGACATCTCAGTGAGTTGGATCTCTCAGGTGCTTCCATGGCCACTTCTTTTGCATCAGTGACAGGTTTCACTTTATTGACAGGAATGGCAAGTGCCTTGGACACCTTATGTGGCCAGTCATATGGAGCAAAGCAGTATCAGAATTTAGGCATATACATGCAGAGGGCCATGGTCGTTCTTACAGTTGTAAGCATTCCAGTAGCAGTTATTTGGGCAAATACAAGATTCATTCTTGTTTTCCTTGGCCAAGATCCTGAGATATCTGCAGCAGCTGGGGAATATGCTAAGTTAATGGTTCCAAGCCTTTTTGGTTATGGTCTTTTGCAGTGCCTAAATAGATTCTTACAAACCCAAAATATTGTATTTCCAATGATGCTCAGCTCAGGAGTGACAACTTTACTACACATTCTTTTTTGTTGGATTATGGTATTCAAGTCTGGATTAGGGTACCGAGGAGCTGCCATAGCAAATTCTATATCTTACTGGCTGAATGTTACCATACTCACACTCTATGTCAAGTTTTCTCCTTCATGTAAGAAAACTTGGAATGGATTTTCCAAAGAGGCACTGCACAACATCCCCACATTCCTGAGGCTTGCCATTCCTTCAGCTGCTATGATTTGCTTGGAAGTGTGGTCTTTTGAAATGATGGTTCTCCTTTCTGGTCTTCTTTCAAATCCAAAACTGGAAACATCAGTGCTTTCTATCTGCTTGAATACAACAACATCTGTTGTGATGATTCCCTTTGGACTAGCTGCTGCTATAAGCATCCGGGTCTCGAATGAACTTGGAGCTGGTCATACACGTGCTGCACGTTTAGCAGTGCGTGTTGTCTCAGTCCTAGCCATTTTCGAGGGTATCATAGTTGCGACTGTGTTGATACTAATACGTAATATCTGGGGCTATGCATATAGTAATGAAGTAGAAGTGGTAAAATATGTAGCAACTATGATGCCAATTCTTGCAACTTCCCACTTTTTGGATGCACTCCAGAGCGTTCTTTCAGGAACAGCTAGAGGATGTGGTTTGCAGAAAATTGGCGCATTTGTGAATCTGGGGTCATACTATTTAGTTGGAATTCCATCATCTATTGTGTTAGCTTTTGTATTGCATCTTGGTGGCAAGGGGTTGTGGCTTGGGATCATATGTGCACTCATTGTTCAACTACTTTCTCTAGTGATCATTACTATACGTACTGATTGGGAGAAACAGGCAAAGAAGGCCACTGATAGAATCTATGACTCAATAACACCAGAGCTCTTAACTTCATGA 1398 0.4134 MSRATERTEVLEEVKKQLWLAGPLIAVGLLNYFLNVISVMFVGHLSELDLSGASMATSFASVTGFTLLTGMASALDTLCGQSYGAKQYQNLGIYMQRAMVVLTVVSIPVAVIWANTRFILVFLGQDPEISAAAGEYAKLMVPSLFGYGLLQCLNRFLQTQNIVFPMMLSSGVTTLLHILFCWIMVFKSGLGYRGAAIANSISYWLNVTILTLYVKFSPSCKKTWNGFSKEALHNIPTFLRLAIPSAAMICLEVWSFEMMVLLSGLLSNPKLETSVLSICLNTTTSVVMIPFGLAAAISIRVSNELGAGHTRAARLAVRVVSVLAIFEGIIVATVLILIRNIWGYAYSNEVEVVKYVATMMPILATSHFLDALQSVLSGTARGCGLQKIGAFVNLGSYYLVGIPSSIVLAFVLHLGGKGLWLGIICALIVQLLSLVIITIRTDWEKQAKKATDRIYDSITPELLTS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2160 465 CDD MATE_eukaryotic 13 449 IPR045069 GO:0042910|GO:1990961
Lja2g2160 465 Pfam MatE 23 183 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2160 465 Pfam MatE 244 405 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2160 465 PANTHER MULTIDRUG RESISTANCE PROTEIN 5 453 - -
Lja2g2160 465 PANTHER PROTEIN DETOXIFICATION 5 453 - -
Lja2g2160 465 TIGRFAM matE: MATE efflux family protein 23 420 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2160 Lja-Chr2 24398136 24400810 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2514 1 29138466 29142518 Lja2g2160 2 24398136 24400810 ECH
Lja2g1818 2 18779356 18783379 Lja2g2160 2 24398136 24400810 ECH
Lja5g0337 5 3024937 3029538 Lja2g2160 2 24398136 24400810 ECH
Lja2g2160 2 24398136 24400810 Lja2g2160 2 24398136 24400810 ECH
Lja4g0047 4 391471 395732 Lja2g2160 2 24398136 24400810 PCT