Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2158 ATGGAGAGTGAACACCAAAAGGCATCTCTGCGGTCTCCTTTGATTCAAAGCGCAGGGCAAGATGGATTCAAGGTAGATGTAAAGCAAACTCTGTTAAGGGCAACAGAAAGAACAGAAGTTCTTGAAGAAGTGAGGAAGCAGTTATGGCTGGCAGGACCTTTAATTTGTGTGAACCTCCTAAATTTTTGCATAAATATTATATCTGTCATGTTTGTTGGACATCTTGGTGAGTTGGCTCTTTCTGGTGCTTCCATGGCAACTTCTTTTGCATCTGTCACGGGTTTGAGTTTCTTGGTAGGAATGGCTAGTGCCTTGGACACCTTCTGTGGGCAGTCATATGGAGCAAAGCAGTATCACAATTTAGGCATACACATGCAGAGGGCCATGTTCGTTCTTATGATTGTAAGCATTCCACTTGCAGTTATTTGGGCAAACACAAGATCCATTCTTGTTTTCCTTGGCCAAGATCCTGAAATATCTGCAGCAGCTGGGGACTATGCTAAGTTAATGGTTCCAAGCCTTTTTGGTTATGGTCTTCTTCAGTGTCTCAACAGATTCTTACAAACCCAAAGTATTGTATTTCCAATGATGCTCAGCTCAGGAGTGACAACTTTACTACACTTTCTTATATGTTGGATTATGGTATTCAAGTCTGGATTAGGGTACAGAGGAGCTGCCATAGCAAATTGTATATCTTACTGGCTGAATGTTACTATACTCTCACTCTATGTCAAGTTTTCTCCTTCATGTAAAAAAACATGGACTGGCTTTTCCAAAGAGGCACTGCAGAACATCTCCACATTTTTTAGGCTTGCCATTCCTTCAGCTGCTATGGTTTGCTTGGAAATGTGGTCTTTTGAGATGATGGTTCTCCTTTCCGGTCTTCTTCCAAATCCAAAGTTGGAAACATCAGTGCTTTCTATCTGCTTGAATACAACGGGAACTGTTTGGATGATTCCCTTTGGACTCAGTGGAGCTGTAAGCACTCGGGTCTCAAATAAACTTGGAGCTGGTAATCCACGCGCTGCCCGTTTAGCAGTGTGTGTTGTGCTAGGCATAGCCATTGTTGAGGGCGCCTTAGCTGCAACAGTGTTGATACTAATACGCAATATCTGGGGCCATGCATATAGTAATGAAGTTGAAGTGGTAAAATATGTAGCAACTATAATGCCAATTCTTGCAACTTCTCACTTTTTGGATGCACTCCAGAGCGTTCTTTCAGGAACTGCTAGAGGATGTGGTTGGCAGAAAATCGGTGCATTTGTCAATCTGGGGTCATACTATTTAGTTGGAATTCCATCAGCTATTGTGTTAGCTTTTGTATTGCATCTTGGCGGCAAGGGGTTGTGGCTGGGGATCGTATGTGCACTCATTGTTCAACTATTTTCTCTAATGATCATTACTATACGTACTGATTGGGAGCAAGAGGCAAAGAAGGCCACAGATAGAGTCTCTGTATGA 1461 0.4251 MESEHQKASLRSPLIQSAGQDGFKVDVKQTLLRATERTEVLEEVRKQLWLAGPLICVNLLNFCINIISVMFVGHLGELALSGASMATSFASVTGLSFLVGMASALDTFCGQSYGAKQYHNLGIHMQRAMFVLMIVSIPLAVIWANTRSILVFLGQDPEISAAAGDYAKLMVPSLFGYGLLQCLNRFLQTQSIVFPMMLSSGVTTLLHFLICWIMVFKSGLGYRGAAIANCISYWLNVTILSLYVKFSPSCKKTWTGFSKEALQNISTFFRLAIPSAAMVCLEMWSFEMMVLLSGLLPNPKLETSVLSICLNTTGTVWMIPFGLSGAVSTRVSNKLGAGNPRAARLAVCVVLGIAIVEGALAATVLILIRNIWGHAYSNEVEVVKYVATIMPILATSHFLDALQSVLSGTARGCGWQKIGAFVNLGSYYLVGIPSAIVLAFVLHLGGKGLWLGIVCALIVQLFSLMIITIRTDWEQEAKKATDRVSV* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2158 486 PANTHER PROTEIN DETOXIFICATION 29 480 - -
Lja2g2158 486 TIGRFAM matE: MATE efflux family protein 53 450 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2158 486 CDD MATE_eukaryotic 43 479 IPR045069 GO:0042910|GO:1990961
Lja2g2158 486 Pfam MatE 274 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2158 486 Pfam MatE 53 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g2158 486 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2158 Lja-Chr2 24384925 24388267 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2158 2 24384925 24388267 Lja4g0047 4 391471 395732 ECH
Lja5g0336 5 3020218 3023852 Lja2g2158 2 24384925 24388267 ECH
Lja2g2158 2 24384925 24388267 Lja2g2158 2 24384925 24388267 ECH