Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2136 ATGTTAGACTCCTCATCACCACCACCATCACTACCATCACAAGGTTATGATGAGCCTCTCCCTGCTGTCCCTGGCTCCAAGCTCCGCCTCATGTGCAGCTACGGCGGCCACATCATGCCACGCCCCCACGACAAAACCCTCTGCTACGTCGGCGGAGACACCCGGATAGTGGTGGTGGACCGCCACTCCTCCTTAAGAGACCTCTGTTCACGCCTCTCCCGAACCATCCTCCATGGAAGACCCTTCACTCTGAAATACCAGCTACCCAATGAGGACCTTGACAACCTCATCACTGTCACAGCCGATGAAGACCTCGACAACATGATCGAGGAGTACGACCGTCTCGCCGCCGCAGCAGCAGCATCTTCCGCCGTGAAGTCTCCACCTTCACGCCTCAGGATTTTTCTGTTCTTCACGAAACCAGAGGCCACAGTTTCAATGGGGTCTCTTCTGGATGAGTCAAAGTCTGAGACATGGTTCGTGGATGCGCTTAACAACTCCGGGATCCTCTCCCGGCGCGTGTCAGATTCCGCCGCCGGGGATTCCGTCGTGAACCTTGATGGTGTTCCGGCTAGCGGTTCAAGCAATAGCTTGGAAGCTCAGGGTGGTGCTACAACTGCAGAGTCTTTGACTCTGCTTGATAGCAGCAACAACAACACCAACAAGAATGTTAAGAATGTTGCTGATGTTGTTAATGTTATCTCAACGCCTGGTTCACCTATGATGGAGAATAGTTCATCTTCTTCTTCTTCTCAATCTCCTTCAATGGCTAATTTGCCTCCGATTCAGGTTCGCGTCGACGACAATGGTGGGACTAGCAGGCTTCAGCAAGAGAAGAGGATTGAAGAGCAGTTTGCTCAGATGACCTTTGGTGCAAGTGGGGTGAAACCAGATGATGGGTTTGTTGTTTCTTCTGCTATGGCTATGCCTACAATGACTCCATCTAATGTGACTATTGTATCAGCTGGGGTGGTTCCTACTAGTGAGTATATGAATAGGGTTGTTTCTGATGATGAGAGATCAGATCATGGAGCACCTGTTGGGTCCAGAAAGCCCCCTTTACCATTGCAGCTTGTGCAACCTAAGACTAGTGCTGGTGGTTTGAGTTTGCCTTCTCCAGATTCAGTTGCAAGTGATAGTAGTAGTATTGCATCTACAAATTCTTTCTCTAGGACAGTTTACTATCAAGAACAAGTCCCAGCTGGACATGTAGACAACAAATCATATGCCAAGAGTGAAATGTCTGATCTTGTGTATGGACTACAAAGGGAACAACAAATTCAGGATCCTAGTTACATGTTACCCCCACAATTGGATCAAAATCAGCAACTCCAGCAGCAACAACAACAGCAGCAGCAACAACAGCAGCAGCAGCAACAGGCATTTGTACATTCCAGCACCCACTACATGCACCACCCTGCAGCCACAGGTCAAGTACCAGTTCCACCCTCCTACTACCAAGTTTATGCCCAACCACCACAGCAACAGCAACAACAACTCCATCAAATTGGTCAAAACCAGTTCCCAGTTTATGTAATGCCTGTAGGACACACACCACAGTACAACATGACATTGCAAGGTAACCCAAATGTTGTGGTACCCCAAAGTGCATACAACAAGGATGGAACTCCACCAGTTTACCCCACTACTAAGTCAACTTCCCCTGTAGCAACAAATCAAACATTTGTTCAAATTCCTTCCAATCAATATCAGCAACAACAGTATGTGAATGTGAATTTGCCTCAATACCATCCTCAACAACAGCCAATTAATGTAGCTCCCTCTGGAGGTGCTAATTATGGTTATGAATATGGTGGCCCTGTGCAAGACCAAGCATACTACACAACACCACAACAACAACAACAAACTAGTGCTCCATTGCTTTCTCAATACCAATCCATGACCCCAGCAGCAGCTGCAGCAGCACTATCAGATGCTTCAATACAATTCCCTGGTGACAACAATGTTCAGCAGCAAAATAGAACTTCACAACCAGTATAA 2001 0.4763 MLDSSSPPPSLPSQGYDEPLPAVPGSKLRLMCSYGGHIMPRPHDKTLCYVGGDTRIVVVDRHSSLRDLCSRLSRTILHGRPFTLKYQLPNEDLDNLITVTADEDLDNMIEEYDRLAAAAAASSAVKSPPSRLRIFLFFTKPEATVSMGSLLDESKSETWFVDALNNSGILSRRVSDSAAGDSVVNLDGVPASGSSNSLEAQGGATTAESLTLLDSSNNNTNKNVKNVADVVNVISTPGSPMMENSSSSSSSQSPSMANLPPIQVRVDDNGGTSRLQQEKRIEEQFAQMTFGASGVKPDDGFVVSSAMAMPTMTPSNVTIVSAGVVPTSEYMNRVVSDDERSDHGAPVGSRKPPLPLQLVQPKTSAGGLSLPSPDSVASDSSSIASTNSFSRTVYYQEQVPAGHVDNKSYAKSEMSDLVYGLQREQQIQDPSYMLPPQLDQNQQLQQQQQQQQQQQQQQQQAFVHSSTHYMHHPAATGQVPVPPSYYQVYAQPPQQQQQQLHQIGQNQFPVYVMPVGHTPQYNMTLQGNPNVVVPQSAYNKDGTPPVYPTTKSTSPVATNQTFVQIPSNQYQQQQYVNVNLPQYHPQQQPINVAPSGGANYGYEYGGPVQDQAYYTTPQQQQQTSAPLLSQYQSMTPAAAAAALSDASIQFPGDNNVQQQNRTSQPV* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2136 666 PANTHER OS05G0427100 PROTEIN-RELATED 5 658 - -
Lja2g2136 666 SUPERFAMILY CAD & PB1 domains 43 147 - -
Lja2g2136 666 SMART PB1_new 42 139 IPR000270 GO:0005515
Lja2g2136 666 Coils Coil 437 461 - -
Lja2g2136 666 MobiDBLite consensus disorder prediction 1 20 - -
Lja2g2136 666 Pfam PB1 domain 44 137 IPR000270 GO:0005515
Lja2g2136 666 MobiDBLite consensus disorder prediction 235 259 - -
Lja2g2136 666 MobiDBLite consensus disorder prediction 235 269 - -
Lja2g2136 666 MobiDBLite consensus disorder prediction 337 382 - -
Lja2g2136 666 ProSiteProfiles PB1 domain profile. 27 139 IPR000270 GO:0005515
Lja2g2136 666 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 5 658 - -
Lja2g2136 666 MobiDBLite consensus disorder prediction 362 382 - -
Lja2g2136 666 CDD PB1_UP2 31 137 - -
Lja2g2136 666 MobiDBLite consensus disorder prediction 432 466 - -
Lja2g2136 666 Gene3D - 45 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2136 Lja-Chr2 23990849 23993680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2136 27 166 MAP Kinase Kinase Kinase AT5G57610 43.662 9.69e-26 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1817 2 18774108 18776533 Lja2g2136 2 23990849 23993680 ECH
Lja2g1476 2 14264365 14266947 Lja2g2136 2 23990849 23993680 ECH
Lja5g0313 5 2744985 2747863 Lja2g2136 2 23990849 23993680 ECH
Lja2g2136 2 23990849 23993680 Lja2g2136 2 23990849 23993680 ECH