Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1832 ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCAGGATTTGCAGGAGATGATGCCCCGCGAGCTGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCACACCGGTGTGATGGTTGGCATGGGCCAGAAGGATGCCTATGTTGGGGATGAGGCACAGTCCAAAAGAGGTATTCTGACTCTCAAGTACCCTATTGAGCATGGTATTGTTAGCAACTGGGACGATATGGAGAAGATTTGGCATCATACCTTCTATAACGAGCTTCGTGTGGCTCCGGAAGAGCATCCCGTTCTGTTGACGGAGGCTCCTCTTAACCCAAAGGCTAATCGTGAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGCCCCTGCTATGTATGTAGCCATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACTACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTTCCACACGCCATCCTTCGTCTTGATTTGGCTGGTCGTGACCTCACTGACTTCTTAATGAAGATTCTGACTGAACGTGGGTACTCGTTTACCACTTCAGCAGAGCGAGAAATTGTCAGGGACATGAAGGAAAAGCTGGCATACATTGCCCTTGACTATGAGCAAGAGATAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACTATTGGTGCTGAGCGTTTTAGGTGTCCAGAGGTCTTGTTCCAACCATCCCTGGTGGGAATGGAAGCTGCAGGAATTCACGAGACAACATACAACTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTATGGTAACATTGTTCTCTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAAATTTCTGCTTTAGCCCCCAGCAGCATGAAGATCAAGGTGGTTGCACCGCCCGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTGAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGATGAATCTGGACCATCAATTGTGCACAGAAAGTGCTTCTAA 1134 0.4815 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQEIETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1832 377 Gene3D - 10 371 - -
Lja2g1832 377 Pfam Actin 5 377 IPR004000 -
Lja2g1832 377 SMART actin_3 7 377 IPR004000 -
Lja2g1832 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Lja2g1832 377 PANTHER ACTIN 1 376 IPR004000 -
Lja2g1832 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lja2g1832 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lja2g1832 377 Gene3D - 140 340 - -
Lja2g1832 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lja2g1832 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lja2g1832 377 PRINTS Actin signature 28 37 IPR004000 -
Lja2g1832 377 PRINTS Actin signature 51 62 IPR004000 -
Lja2g1832 377 PRINTS Actin signature 63 85 IPR004000 -
Lja2g1832 377 PRINTS Actin signature 117 130 IPR004000 -
Lja2g1832 377 PRINTS Actin signature 142 161 IPR004000 -
Lja2g1832 377 PRINTS Actin signature 238 254 IPR004000 -
Lja2g1832 377 PANTHER ACTIN-11 1 376 - -
Lja2g1832 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lja2g1832 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1832 Lja-Chr2 18873172 18875989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1832 1 377 Cytoskeleton Gene Families AT3G12110 97.347 0.0 768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1832 2 18873172 18875989 Lja2g2191 2 24937981 24940951 ECH
Lja2g1832 2 18873172 18875989 Lja2g1832 2 18873172 18875989 ECH
Lja2g3238 2 71516425 71519276 Lja2g1832 2 18873172 18875989 ECH
Lja2g1832 2 18873172 18875989 Lja1g2534 1 29404760 29407745 PCT